View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_18 (Length: 502)
Name: NF1627_high_18
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 47333114 - 47333592
Alignment:
| Q |
18 |
gttcttgtttttgttctacttgcagttgctgcaaacctgttccatggatcatttgcacaaactagacatgtggttggtgataccacgggttggactatcc |
117 |
Q |
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| T |
47333114 |
gttcttgtttttgttctacttgcagttgctgcaaacctgttccatggatcatttgcacaaactagacatgtggttggtgataccacgggttggactatcc |
47333213 |
T |
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| Q |
118 |
caaccaacggtgcttcattctataccaactgggcttccaacaaaaccttcaccgtaggcgacactctaggtaagaaataatatatttcaggcccttgtcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47333214 |
caaccaacggtgcttcattctataccaactgggcttccaacaaaaccttcaccgtaggcgacactctaggtaagaaataatatatttcagacccttgtcg |
47333313 |
T |
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| Q |
218 |
ttttgattcgtttatataaaaattgttttaacgtaaacttgattttgcagtgttcaattatgcaagtggacaacatgatgtggctaaggtaacaaaaaca |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333314 |
ttttgattcgtttatataaaaattgttttaaggtaaacttgattttgcagtgttcaattatgcaagtggacaacatgatgtggctaaggtaacaaaaaca |
47333413 |
T |
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| Q |
318 |
gcttacgatagttgcaatggagcaaacacacttttcaccttaacaaacagtccagctacggtaactttgaacgaaacaggacaacagaacttcatttgtg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47333414 |
gcttacgatagttgcaatggagcaaacacacttttcaccttaacaaacagtccagctaccgtaactttgaacgaaacaggacaacagaacttcatttgtg |
47333513 |
T |
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| Q |
418 |
ccgttccaggtcattgttcagctggtcaaaaactttcaattaatgttgttaaagcttctgcttcacctgtctctgctcc |
496 |
Q |
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| T |
47333514 |
cagttccaggtcattgttcagctggtcaaaaactttcaattaacgttgttaaagcttctgcttcacctgtttctgctcc |
47333592 |
T |
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