View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_28 (Length: 410)
Name: NF1627_high_28
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 4526934 - 4526554
Alignment:
| Q |
1 |
cttctcagcctagacaagtaccggttttcgagctcctattagagaaagcaatggaaaagtgcgctgccggccgcgcctgacttggagatttatacatcct |
100 |
Q |
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| T |
4526934 |
cttctcagcctagacaagtaccggttttcgagctcctattagagaaagcaatggaaaagtgcgctgccg----cgcctgacttggagatttatacatcct |
4526839 |
T |
|
| Q |
101 |
cttgttgggaaaggaacaaactttctcaaagtcaaatttctggcttgttagtcaagctttgaagcccctacatacttaaaggttgggatattgagagaag |
200 |
Q |
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| T |
4526838 |
cctgttgggaaaggaacaaactttctcaaagtcaaatttctcgcttgttagtcaagctttgaagcccctacatacttaaaggttgggatattaagagaag |
4526739 |
T |
|
| Q |
201 |
cgctggtttggaacataatcctacaagtttttcatatattttagagactattcacaattttcttcacatactttaggattagagttaagttgtaaataca |
300 |
Q |
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| T |
4526738 |
cgctggtttggaacataatcctacaagtttttcatatattttagagactattcacaattttcttcacatactttaggattagagttaagttgtaaataca |
4526639 |
T |
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| Q |
301 |
catattggaccttgaaattataagctgtaaacatgatcacaaaaactgcaaaactttaatcaaattttcctctgtgttggtagac |
385 |
Q |
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| T |
4526638 |
catattggaccttgaaattataagctgtaaacatgatcacaaaaactgcaaaactttaatcaaattttcctctgtgttggtagac |
4526554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 89 - 353
Target Start/End: Complemental strand, 4495533 - 4495272
Alignment:
| Q |
89 |
tttatacatcctcttgttgggaaaggaacaaactttctcaaa-gtcaaatttctggcttgttagtcaagctttgaagcccctacatacttaaaggttggg |
187 |
Q |
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|||||||||||||||||| ||| ||||| |||||||| ||| ||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4495533 |
tttatacatcctcttgtttggagaggaaggaactttctgaaatgtcaactttctcgattgttagtcaagctttgaagcccctacttacttaaaggttggg |
4495434 |
T |
|
| Q |
188 |
atattgagagaagcgctggtttggaacataatcctacaagtttttcatatattttagagactattcacaattttcttcacatactttaggattagagtta |
287 |
Q |
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| T |
4495433 |
atattaaaagaacag----tttggaacataatcctacaagtttttcatatattttagagactcttcacaatattctgcacatactttaggattagaatta |
4495338 |
T |
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| Q |
288 |
agttgtaaatacacatattggaccttgaaattataagctgtaaacatgatcacaaaaactgcaaaa |
353 |
Q |
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| T |
4495337 |
agttgtaaatacacatattggaccttgaaattataagttgtaaacatgatcacaaaaactgcaaaa |
4495272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 465796 - 465887
Alignment:
| Q |
119 |
aactttctcaaagtcaaatttctggcttgttagtcaagctttgaag-cccctacatacttaaaggttgggatattgagagaagcgctggttt |
209 |
Q |
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|||| ||||||||| || ||||| |||| ||||||||||||||||| ||||||| | ||| | |||||||||||| | |||||||||||||| |
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| T |
465796 |
aactgtctcaaagtaaactttctcgcttattagtcaagctttgaagccccctactttctttatggttgggatattaaaagaagcgctggttt |
465887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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