View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_high_29 (Length: 408)

Name: NF1627_high_29
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_high_29
NF1627_high_29
[»] chr1 (2 HSPs)
chr1 (16-408)||(29166359-29166753)
chr1 (171-231)||(29173944-29174004)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 29166753 - 29166359
Alignment:
Q  16 atgtaggtaacaaatttagttgtaaaaaatgaggccaaaaatccaaaacataatttgatcaaatttctattacnnnnnnnaggtggtcttctaaaaatat 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||       ||||||||| ||||||||||    
T  29166753 atgtaggtaacaaatttagttgtaaaaaatgaggccaaaagtccaaaacataatttgataaaatttctattactttttttaggtggtctgctaaaaatat 29166654  T
Q  116 cttataactaattaagaaaaatgtaagttatagtgtaattttgtaaagatgacaaaggtgacaaatctagttatagaaaaagaggccaaaacataaattg 215  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29166653 cttataactaattaagaaaaatgtaagttacagtctaattttgtaaagatgccaatggtgacaaatctagttatagaaaaagaggccaaaacataaattg 29166554  T
Q  216 atctaatttctattacnnnnnnnnnnnnnnnnnngtggtttgatagaaatatcttatactagctaattaagaaaaaatta----agtgttaattttttnn 311  Q
    ||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||        
T  29166553 atctaatttctattac--ttttttttttgtttttgtggtttgatagaaatatcttatactagctaattaagaaaaaattaagttagtgttaattttaaaa 29166456  T
Q  312 nnnnnntatatttcattatttactcaaataaatttacgtttcttctaactatatgtaccctcaacctaccaattgtcatccttttttattatcatta 408  Q
           | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29166455 aaaaaaaaaaattcattatttactcaaataaatttacgtttcttctaactatatgtacccacaacctaccaattgtcatccttttttattatcatta 29166359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 29174004 - 29173944
Alignment:
Q  171 aggtgacaaatctagttatagaaaaagaggccaaaacataaattgatctaatttctattac 231  Q
    |||| |||||| ||| |||| |||| ||||||||||||||| |||||| ||||| ||||||    
T  29174004 aggtaacaaatttagatatacaaaatgaggccaaaacataatttgatcaaatttgtattac 29173944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University