View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_34 (Length: 346)
Name: NF1627_high_34
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 55230946 - 55230617
Alignment:
| Q |
1 |
agctcgtgagaaaaattgttactacacatgtctattttgatcatataaagtttattcacttgcttaaagtaaccannnnnnnnnnnnnnnnnncttnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
55230946 |
agctcgtgagaaaaattgttactacacatgtctattttgatc--ataaagtttattcacttgcttaaagtaaccattttttttgtttgtttttcttaaaa |
55230849 |
T |
|
| Q |
101 |
nnnttctatcagagatgataattctattcacacaacgtcatggacatctattttaatcttctttttcagacgtatttttgtcattgtacatgtttgtcat |
200 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55230848 |
aaattctatccgaga---taattctattcacacaacgtcatggacatctattttaatcttctttttcagacgtatttttgtcattgtacatgtttgtcat |
55230752 |
T |
|
| Q |
201 |
gttggttgtttatannnnnnnncattttcatttaataatctctgcctattttttgtggaatatctagtttagactagagat-----nnnnnnnnntggtc |
295 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55230751 |
gttggttgtttatattttttttcattttcatttaataatctctgcctattttttgtggaatatctagtttagactagagataaaaaaaaaaaaaatggtc |
55230652 |
T |
|
| Q |
296 |
cacgcgacgtgagtgtctagaagacaagacctttg |
330 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
55230651 |
cacgcgacgtgagtgtctagaagacaagacctttg |
55230617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47108838 - 47108790
Alignment:
| Q |
1 |
agctcgtgagaaaaattgttactacacatgtctattttgatcatataaa |
49 |
Q |
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|||||||||||||||||| || | |||||||| ||||||||||||||| |
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| T |
47108838 |
agctcgtgagaaaaattgctaacaaacatgtctgttttgatcatataaa |
47108790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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