View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_36 (Length: 343)
Name: NF1627_high_36
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 43383946 - 43383607
Alignment:
| Q |
1 |
aggtggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttg------tgggttccactttttcccaatgacacctcttatgaccaccgagt |
94 |
Q |
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| T |
43383946 |
aggtggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttggtgttttgggttccactttttcccaatgacacctcttatgaccaccgagt |
43383847 |
T |
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| Q |
95 |
gcttgtccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagtttatcatctcattattattaaccgcttcccctt------cca |
188 |
Q |
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| T |
43383846 |
gcttgtccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagttaatcatctcattattattaaccgcttccccttccacttcca |
43383747 |
T |
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| Q |
189 |
cgtttccaccacgagtcattgtgtcatcgtgaggcgtcatgaatgtccttccagtagtagaattagaagaagcggtta------ttgttgtattggcgaa |
282 |
Q |
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| T |
43383746 |
cgtttccaccacgagtcattgtgtcatcgtgaggcgtcatgaacgtccttccagtagtagaattagaagaagcggttattgttgttgttgtattggcgaa |
43383647 |
T |
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| Q |
283 |
acagcccttgacattcttgtgactagccctatgtcctcca |
322 |
Q |
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| T |
43383646 |
acagcccttgacattcttgtgactagccctgtgtcctcca |
43383607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 25870616 - 25870423
Alignment:
| Q |
1 |
aggtggaaaagggaaattcaaatcaaatggtagtgttggtgttggtgttgtgggttccactttttcccaatgacacctcttatgaccaccgagtgcttgt |
100 |
Q |
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| T |
25870616 |
aggtggaaaagggaaattcaaatcaaatggtagtgttggtgtcg------tgggttcccctttatcccaatgacacctcttatgaccaccgagtgcttgt |
25870523 |
T |
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| Q |
101 |
ccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagt--ttatca-tctcattattattaaccgcttccccttccacgtttccac |
197 |
Q |
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| T |
25870522 |
ccagtgctaaataccctcaaacatatgctacacttgtgtccgatgatgcagtcattattattattattactattaacctcttccccttcaacgtttccac |
25870423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 25870382 - 25870337
Alignment:
| Q |
277 |
ggcgaaacagcccttgacattcttgtgactagccctatgtcctcca |
322 |
Q |
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| T |
25870382 |
ggcgaaacagcccttgacattcttgtgactagccctgtgtcctcca |
25870337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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