View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_40 (Length: 315)
Name: NF1627_high_40
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 29166310 - 29166037
Alignment:
| Q |
26 |
tattttatttcataataaaagataattactccccttaaaagttgtttgtacttatgtttttcatttactttttaagaatatattcgtagatgataaaccc |
125 |
Q |
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| T |
29166310 |
tattttatttcataataaaagataattactctctttaaaagttgtttgtacttatgttttttatttactttttaagaatatattcgtagatgataaaccc |
29166211 |
T |
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| Q |
126 |
agatccacctttagaagtacttgtcaaaagtttgtggcagatgcgaacagctggtgagggtggagtaagaatagaaagttcccaatgatagaagactcta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29166210 |
agatccacctttagaagtacttgtcaaaagtttgtggcagatgcgaacagctggtgagggtggagtaagaatagaaagttcccaatgatagaagactcaa |
29166111 |
T |
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| Q |
226 |
acctaacgcactcttcatatattatagaagtaagaataagtgcagcttattcttggaagtacgttctttaaatc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
29166110 |
acctaacgcactcttcatatattatagaagtaagaataagtgcagcttattattggaaatacgttctttaaatc |
29166037 |
T |
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