View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_44 (Length: 289)
Name: NF1627_high_44
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 61 - 278
Target Start/End: Complemental strand, 14813695 - 14813478
Alignment:
| Q |
61 |
aatactacacagatgatagcaaatttttaattgttttcgaaaaccaaataggtcctacatgtaacatgtgtccatttagacagaaagacacagacaattt |
160 |
Q |
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| T |
14813695 |
aatactacacagatgatagcaaatttttaattgttttcgaaaaccaaataggtcctacatgtaacatgtgtccatttagacagaaagacacagacaattt |
14813596 |
T |
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| Q |
161 |
gattccaataacacagctttcctcttgattaatcaaataaataatttcactaactaactatataatttgttcttttatattttatctgttatagtctgcg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813595 |
gattccaataacacagctttcctcttgattaatcaaataaataatttccctaactaactatataatttgttcttttatattttatctgttatagtctgcg |
14813496 |
T |
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| Q |
261 |
tattttgccataattcat |
278 |
Q |
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|||||||||||||||||| |
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| T |
14813495 |
tattttgccataattcat |
14813478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 14813764 - 14813717
Alignment:
| Q |
15 |
actaacaacctttaatcattgaagctaaaaggaaaatggactatgaaa |
62 |
Q |
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| T |
14813764 |
actaacaacctttaatcattgaagctaaaaggaaaatggactatgaaa |
14813717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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