View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_47 (Length: 267)
Name: NF1627_high_47
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 44515531 - 44515283
Alignment:
| Q |
3 |
ttttacacattccctccaaccgttgacgtgcaaaacggtttactgcgtattgtgtagaaagctcaattggatcttcaggcctaagggcgcaattgatcac |
102 |
Q |
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| T |
44515531 |
ttttacacattccctccaaccgttgacgtgcaaaacggtttactacgtattgtgtagaaagctcaattggatcttcaggcctaagggcgcaattgatcac |
44515432 |
T |
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| Q |
103 |
gctttcaacacaagaaacaacaccaaaaatagaacagacccctgttnnnnnnnntggtcatgagcaacaatagcaagctagaacaggtttaattcaacca |
202 |
Q |
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| T |
44515431 |
gctttcaacacaagaaacaacaccaaaaatagaacagacccctgttaaaaaaaatggtcataagcaacaatagcaagctagaacaggtttaattcaacta |
44515332 |
T |
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| Q |
203 |
aacaccaagtctagtaaataacatatatgtatcattctataataataac |
251 |
Q |
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| T |
44515331 |
aacaccaagtctagtaaataacatacatgcatcattctataataataac |
44515283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 44509761 - 44509702
Alignment:
| Q |
192 |
taattcaaccaaacaccaagtctagtaaataacatatatgtatcattctataataataac |
251 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44509761 |
taattcaactaaacaccaagtctagtaaataacatatatgtatcattctataataataac |
44509702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 26505465 - 26505407
Alignment:
| Q |
192 |
taattcaaccaaacaccaagtctagtaaataacatatatgtatcattctataataataa |
250 |
Q |
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| T |
26505465 |
taattcaactaaacaccaaatctagtaaataatatatatgtaactttctataataataa |
26505407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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