View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_high_50 (Length: 265)

Name: NF1627_high_50
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_high_50
NF1627_high_50
[»] chr5 (10 HSPs)
chr5 (9-225)||(1849620-1849836)
chr5 (9-225)||(1163930-1164146)
chr5 (9-212)||(3299149-3299352)
chr5 (9-212)||(3392042-3392245)
chr5 (14-208)||(38987356-38987550)
chr5 (14-208)||(40417946-40418140)
chr5 (60-208)||(39726115-39726263)
chr5 (60-208)||(39879517-39879665)
chr5 (60-206)||(39168603-39168749)
chr5 (93-207)||(39399637-39399751)
[»] chr4 (1 HSPs)
chr4 (9-206)||(25912530-25912727)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1849620 - 1849836
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849620 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 1849719  T
Q  109 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1849720 tttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcg 1849819  T
Q  209 gtatcgagaaattagat 225  Q
    |||||||||||||||||    
T  1849820 gtatcgagaaattagat 1849836  T

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Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 1164146 - 1163930
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1164146 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 1164047  T
Q  109 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||    
T  1164046 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 1163947  T
Q  209 gtatcgagaaattagat 225  Q
    |||| ||||||||||||    
T  1163946 gtattgagaaattagat 1163930  T

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Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 3299149 - 3299352
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 108  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  3299149 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3299248  T
Q  109 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  3299249 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3299348  T
Q  209 gtat 212  Q
    ||||    
T  3299349 gtat 3299352  T

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Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 3392042 - 3392245
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 108  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  3392042 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3392141  T
Q  109 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  3392142 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3392241  T
Q  209 gtat 212  Q
    ||||    
T  3392242 gtat 3392245  T

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Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 38987356 - 38987550
Alignment:
Q  14 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttac 113  Q
    ||||||||  |||| ||| ||||||||| ||||||||||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||    
T  38987356 ttctgcctcctaatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttac 38987455  T
Q  114 cttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    ||||||||||||||||||| | ||| |||  |||||| | ||||| |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  38987456 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg 38987550  T

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Target: chr5; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 40417946 - 40418140
Alignment:
Q  14 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttac 113  Q
    ||||||||  |||| ||| ||||||||| |||  |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  40417946 ttctgcctcctaatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttac 40418045  T
Q  114 cttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    ||||||||||||||||||| | ||| |||  |||||| | ||||| |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  40418046 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg 40418140  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 39726115 - 39726263
Alignment:
Q  60 tattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcaccc 159  Q
    |||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||  |||||| | |||||     
T  39726115 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39726214  T
Q  160 ttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  39726215 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcg 39726263  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 39879517 - 39879665
Alignment:
Q  60 tattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcaccc 159  Q
    |||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||  |||||| | |||||     
T  39879517 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39879616  T
Q  160 ttcctgccttcattctctaggcatcagttagtggaatatgttgttctcg 208  Q
    |||   | |||||||  ||||  ||||||||| ||||||||||||||||    
T  39879617 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcg 39879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 39168603 - 39168749
Alignment:
Q  60 tattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcaccc 159  Q
    ||||||||| || ||||||||||||| || | ||||||| ||||||||||||||||||||    | || |||||||||||||   |||||| ||||||||    
T  39168603 tattgttatatgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccc 39168702  T
Q  160 ttcctgccttcattctctaggcatcagttagtggaatatgttgttct 206  Q
    |||  || ||||||| |||||  |||||||||| |||||||||||||    
T  39168703 ttcacgcattcattcactaggactcagttagtgaaatatgttgttct 39168749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 39399637 - 39399751
Alignment:
Q  93 tactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtg 192  Q
    ||||||||||||||||||||||||||||   | || ||||||||||||||  |||||| ||||||| |||  || |||||||  ||||  |||||||||     
T  39399637 tactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtc 39399736  T
Q  193 gaatatgttgttctc 207  Q
     ||||| ||||||||    
T  39399737 aaatattttgttctc 39399751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 25912727 - 25912530
Alignment:
Q  9 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 108  Q
    |||| ||||||||  |||| |||||||||||||  ||  |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||    
T  25912727 gatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttacttgatcca 25912628  T
Q  109 tttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtggaatatgttgttct 206  Q
    ||||||||||| || |||||||| ||||||||||  |||||| |||||||||||  ||||| |||| |||||| ||||||||| |||||| |||||||    
T  25912627 tttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatatattgttct 25912530  T

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