View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_61 (Length: 244)
Name: NF1627_high_61
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_61 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 7096114 - 7096354
Alignment:
| Q |
4 |
attatactccaatgacgacattgatgcactattattaatgacaaatgataaaccatttaaatttaaatatttcttaattatgatatgccgatgttcaata |
103 |
Q |
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| T |
7096114 |
attataatccaatgacgacattaatgcactattattaatgacaaatgataaaccatttaaatttaaatatttcttaattatgatatgccgatgttcaata |
7096213 |
T |
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| Q |
104 |
gcttttgtttttaaatagatgaaaaaagaattagaaaaatcaaccacaactgacacctgagagtagcctatgttacctttatgtgattcaacatttggat |
203 |
Q |
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| T |
7096214 |
gcttttgtttttaaatagatgaaaaaagaattagaaaaatcaaccacaactgatacctgagagtagcctatgttacctttatgtgattcaacatttggat |
7096313 |
T |
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| Q |
204 |
catccatggaaagctgaatatttcgactaacagcagaatta |
244 |
Q |
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| T |
7096314 |
catccatggaaggctgaatatttcgactaacagcagaatta |
7096354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 7585012 - 7584826
Alignment:
| Q |
39 |
taatgacaaatgataaa-ccatttaaatttaaatatttcttaattatgatatgccgatgttcaatagcttttgtttttaaatagatgaaaaaagaattag |
137 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| | ||| ||||||||||||| | | ||| |
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| T |
7585012 |
taatgacaaatgataaaaccatttaaatttaaatatttcttaattatgatatgccaatattcaatagttattg-ttttaaatagatg-atatttttttac |
7584915 |
T |
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| Q |
138 |
aaaaatcaaccacaactgacacctgagagtagcctatgttacctttatgtgattcaacatttggatcatccatggaaagctgaatattt |
226 |
Q |
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| T |
7584914 |
aaaaatcaatcacaaatgacacctgagcatagcctaatttacctttatgtgatttaccatttggaccatccatggaaagctggatattt |
7584826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 17980299 - 17980484
Alignment:
| Q |
42 |
tgacaaatgataaaccatttaaatttaaatatttcttaattatgatatgccga-tgttcaatagcttttgtttttaaatagatgaaaaaagaattagaaa |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||| || ||||||||| |||||||||| ||| ||| |
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| T |
17980299 |
tgacaaatgataaaccatttaaatttaaatatttcttaattatcatatgctgaattttcagtattttttgttttaaaatagatgattttttttttacaaa |
17980398 |
T |
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| Q |
141 |
aatcaaccacaactgacacctgagagtagcctatgttacctttatgtgattcaacatttggatcatccatggaaagctgaatattt |
226 |
Q |
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| T |
17980399 |
aatcaaccacaaatgacacctgagaatagcctaagttacctttatgtgattcaacatttggatcatccatggaaagctgaatattt |
17980484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 9623999 - 9623885
Alignment:
| Q |
46 |
aaatgataaaccatttaaatttaaata-tttcttaattatgatatgccgatgttcaatagcttttgtttttaaatagatgaaaaaagaattagaaaaatc |
144 |
Q |
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||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
9623999 |
aaatgataaaccatttaaatttatttaattttttaattatgatatgccaatgttcaatagtttttgtttttaaatagatgaaaaa--aattacaaaaatc |
9623902 |
T |
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| Q |
145 |
aaccacaactgacacct |
161 |
Q |
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| T |
9623901 |
aactacaactgacacct |
9623885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 9623702 - 9623625
Alignment:
| Q |
149 |
acaactgacacctgagagtagcctatgttacctttatgtgattcaacatttggatcatccatggaaagctgaatattt |
226 |
Q |
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| T |
9623702 |
acaactgacacctgagattagcctaggttacctttatgtgattcaacatttggatcctgcatggaaagctgaatattt |
9623625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 13613246 - 13613360
Alignment:
| Q |
46 |
aaatgataaaccatttaaatttaaata-tttcttaattatgatatgccgatgttcaatagcttttgtttttaaatagatgaaaaaagaattagaaaaatc |
144 |
Q |
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||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||| |
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| T |
13613246 |
aaatgataaaccatttaaatttatttaattttttaattatgatatgccaatgttcaatagtttttgtttttaaatagatgaaaaa--aattacaaaaatc |
13613343 |
T |
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| Q |
145 |
aaccacaactgacacct |
161 |
Q |
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| T |
13613344 |
aactacaactgacacct |
13613360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 13613543 - 13613620
Alignment:
| Q |
149 |
acaactgacacctgagagtagcctatgttacctttatgtgattcaacatttggatcatccatggaaagctgaatattt |
226 |
Q |
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| T |
13613543 |
acaactgacacctgagattagcctaggttacctttatgtgattcaacatttggatcctgcatggaaagctgaatattt |
13613620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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