View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_68 (Length: 222)
Name: NF1627_high_68
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_68 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 37416626 - 37416810
Alignment:
| Q |
18 |
atgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttttagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
117 |
Q |
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| T |
37416626 |
atgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
37416725 |
T |
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| Q |
118 |
gagcatctatagaatggaagcaagtgcagaaacaaccagctttattgtctctgcataaccaattttgaaagtacaatccaatgtc |
202 |
Q |
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| T |
37416726 |
gagcatctatagaatggaagcaagtgtagaaacaaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtc |
37416810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 37424158 - 37424342
Alignment:
| Q |
18 |
atgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttttagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424158 |
atgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
37424257 |
T |
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| Q |
118 |
gagcatctatagaatggaagcaagtgcagaaacaaccagctttattgtctctgcataaccaattttgaaagtacaatccaatgtc |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37424258 |
gagcatctatagaatggaagcaagtgtagaaacaaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtc |
37424342 |
T |
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