View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_high_72 (Length: 216)
Name: NF1627_high_72
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 22837652 - 22837836
Alignment:
| Q |
15 |
caatgagattaaattaaaaagaaggggtcatttatgcaacaaagtccaccaataattgagttttcaatgctttctaacatgcg-gtgcaaattcagacaa |
113 |
Q |
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| T |
22837652 |
caatgagattaaattaaaaagaaggggtcatttatgcaacaaagttggccaataattgagttttgaatgctttctgacattcgagtgaaaattcagacaa |
22837751 |
T |
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| Q |
114 |
ctccacaaatcatttcgccatcctttccgcaagttattatgatctggataacatgtctttaatgggctagttgattggtactgtt |
198 |
Q |
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| T |
22837752 |
ctccacataacatttcgccatcctttctgcaagttattatgatccggataacatgtctttaatgggctagtcggttggtactgtt |
22837836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 22827292 - 22827380
Alignment:
| Q |
107 |
cagacaactccacaaatcatttcgccatcctttccgcaagttattatgatctggataacatgtctttaatgggctagttgattggtact |
195 |
Q |
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| T |
22827292 |
cagacaacaccactgaacatttcgccatgctttccgcaagttaatatgatctgaataacatgtgtttattgggctggtcgatttgtact |
22827380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 22814940 - 22814985
Alignment:
| Q |
15 |
caatgagattaaattaaaaagaaggggtcatttatgcaacaaagtc |
60 |
Q |
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| T |
22814940 |
caatgatattaaattaaaaagaaggggtcatttatgctacaaagtc |
22814985 |
T |
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