View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1627_high_9 (Length: 563)
Name: NF1627_high_9
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_high_9 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 21 - 556
Target Start/End: Complemental strand, 23018327 - 23017792
Alignment:
| Q |
21 |
accgattagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018327 |
accgattagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcgccaatcaacttcactgaagctgtactttcttcgatatac |
23018228 |
T |
|
| Q |
121 |
acaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgact |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018227 |
acaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgact |
23018128 |
T |
|
| Q |
221 |
tgggtgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatatttgagaa |
320 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23018127 |
tgggagattcgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatattagagaa |
23018028 |
T |
|
| Q |
321 |
catcattgatgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggat |
420 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018027 |
catcattgatgaacataaaagggaaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggat |
23017928 |
T |
|
| Q |
421 |
ggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaagtagtaacctcttccaaatacttatttactattgtaaaattt |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23017927 |
ggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaagtagtaacctcttccaaatacttatttactattgtaaaattt |
23017828 |
T |
|
| Q |
521 |
aaatgaaatctttgaagctgtgaaatattttcttcg |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23017827 |
aaatgaaatctttgaagctgtgaaatattttcttcg |
23017792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 29 - 501
Target Start/End: Complemental strand, 23033916 - 23033451
Alignment:
| Q |
29 |
gagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatacacaattgt |
128 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||| | |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
23033916 |
gagaagaggttttctccaatcttgtcaaaacgattgcttcgcagaatggatcacccttcaaccttactgaagctgtaatttcttcaatatacacaattgt |
23033817 |
T |
|
| Q |
129 |
ttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttgggtgat |
228 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||| || | |||||||||||| ||||||| ||||||| ||| |
|
|
| T |
23033816 |
ttcaagggccgcctttggcaatgaatgcagagaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagat |
23033717 |
T |
|
| Q |
229 |
ttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatatttgagaacatcattg |
328 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| | ||||||||| ||||||| ||||||| ||||| |||||||| ||||| |||||||| | |
|
|
| T |
23033716 |
ttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgagaagtttcatcgacaaaatgatgagatgtttgaaaacatcatcg |
23033617 |
T |
|
| Q |
329 |
atgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggatggtagtga |
428 |
Q |
| |
|
|||| ||||||| || |||||||||||| | | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23033616 |
atgagcataaaaaggcaaagtacacaaacgcc---------caaggtaaggtagtagaagatctggtagacattctcttaaaatatgaggatggtagtga |
23033526 |
T |
|
| Q |
429 |
ccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaa--gtagtaacctcttccaaatactt |
501 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
23033525 |
ccaagatttcttcttaacaaaagacaatatcaaggctataatcttggtaagcgtaataaactcttccaaatactt |
23033451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 25 - 479
Target Start/End: Complemental strand, 23040114 - 23039660
Alignment:
| Q |
25 |
attagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatacacaa |
124 |
Q |
| |
|
||||||||||| || || ||||||||| |||| | |||||||||| | | ||| ||||||||| | ||||||||||||| |||||| |||||||||| |
|
|
| T |
23040114 |
attagagaagaagtgttttccaatcttgtcaaatggattgcttcacgggacggaattccaatcaacattactgaagctgtacgttcttcaatatacacaa |
23040015 |
T |
|
| Q |
125 |
ttgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttggg |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |||| ||||| |||| | |||||||||||||| |
|
|
| T |
23040014 |
ttgtttcaagggctgcctttggcaatgaatgcaaggaccaagacaaatttatatcagtggtaaaacaatcaataaaggttgccgggggttttgacttggg |
23039915 |
T |
|
| Q |
225 |
tgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatatttgagaacatc |
324 |
Q |
| |
|
||||||||||| || |||||||| | || |||||| ||| ||||||||||| |||||| ||||||| |||||| ||| ||||||| || |||||| |
|
|
| T |
23039914 |
agatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatc |
23039815 |
T |
|
| Q |
325 |
attgatgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggatggta |
424 |
Q |
| |
|
|| |||| |||||| || |||||||||||||| ||||| |||||||||| | |||| ||||||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
23039814 |
atcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctcgtagacgttctcttaaaatatgaggacggta |
23039715 |
T |
|
| Q |
425 |
gtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
479 |
Q |
| |
|
| |||| || || | ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
23039714 |
gcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaag |
23039660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 82 - 479
Target Start/End: Complemental strand, 23146932 - 23146535
Alignment:
| Q |
82 |
ccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcag |
181 |
Q |
| |
|
||||||||| | ||||||||||||| ||| || ||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
23146932 |
ccaatcaacattactgaagctgtacgttcgtcaatatacacaattgtttcgagggctgcttttggcaatgaatgcaaagaccaagataaatttatatcag |
23146833 |
T |
|
| Q |
182 |
tggtaaaagaatctgtaaagattgcagcaggttttgacttgggtgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagat |
281 |
Q |
| |
|
|||||||| |||| ||||| |||||| |||||||||||||| ||||||||||| || |||||||| | || |||||| ||| ||||||||||| | |
|
|
| T |
23146832 |
tggtaaaacaatcaataaaggttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagct |
23146733 |
T |
|
| Q |
282 |
tgagaaatttcatcaacaaaccgatgagatatttgagaacatcattgatgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggta |
381 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||||||| |||||||| |||| |||||| || |||||||||||||| ||||| |||||||||| | ||| |
|
|
| T |
23146732 |
tgagaggtttcatcgacaaactgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagta |
23146633 |
T |
|
| Q |
382 |
gcagaagatctggtagacattctcttaaaatatgaggatggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
479 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||||| ||||| |||| || || | ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
23146632 |
gaagaagatctgatagacgttctcttaaaatatgaggacggtagcaaccaggagtttaccttaacaaaaaacaatatcaaggccataatcctggtaag |
23146535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 21 - 479
Target Start/End: Complemental strand, 23037241 - 23036783
Alignment:
| Q |
21 |
accgattagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatac |
120 |
Q |
| |
|
||||||||||||||| || | ||||||||| |||| | |||||||||| |||| ||| | |||||||| || |||||||||||||||| | || ||| |
|
|
| T |
23037241 |
accgattagagaagaagtgctttccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtac |
23037142 |
T |
|
| Q |
121 |
acaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgact |
220 |
Q |
| |
|
||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||| | || | ||||| |||||| |||||| ||| |
|
|
| T |
23037141 |
acaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaact |
23037042 |
T |
|
| Q |
221 |
tgggtgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatatttgagaa |
320 |
Q |
| |
|
|||| ||||||||||| || |||||||||| || | |||| ||||||||||||||| | |||| |||||| |||||| ||| ||||||| || || |
|
|
| T |
23037041 |
tgggagatttgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaa |
23036942 |
T |
|
| Q |
321 |
catcattgatgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggat |
420 |
Q |
| |
|
|||||| |||| |||||| || |||||||||||||| ||||| |||||||||| |||| ||||||||| |||||| |||||||||| || |||||| |
|
|
| T |
23036941 |
catcatcaatgagcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaagatctcgtagacgttctcttaaattacgaggat |
23036842 |
T |
|
| Q |
421 |
ggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
479 |
Q |
| |
|
|| || ||||||| | || || |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
23036841 |
ggcagaaaccaagacctttccttgacaaaaaacaatatcaaggccataataatggtaag |
23036783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 23025343 - 23025144
Alignment:
| Q |
22 |
ccgattagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatataca |
121 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||| | ||||||||| || | |||||||| |||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
23025343 |
ccgattagagaagaagagttctccaatcttgtcaaatggattgcttcgaaggaaggatcacccatcaacctcactcaagctgtactttcttcaatataca |
23025244 |
T |
|
| Q |
122 |
caattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaaga-atctgtaaagattgcagcaggttttgact |
220 |
Q |
| |
|
| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| | |||||| || | |||||||||||||||||||||||| |
|
|
| T |
23025243 |
ctattgtttcaaaatctgcctttggcaagaaattcaaagaccaagaaaaatttatatcagcagaaaaagagatat-taaagattgcagcaggttttgact |
23025145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 23141337 - 23141123
Alignment:
| Q |
25 |
attagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatacacaa |
124 |
Q |
| |
|
||||||||||| | |||||||||||| |||| | ||| ||||| |||| |||||| | |||||| ||||| |||||||||||||||| |||||||| | |
|
|
| T |
23141337 |
attagagaagaagagttctccaatcttgtcaaatggataacttcaaagaaaggatcatccatcaacctcactcaagctgtactttcttcaatatacacta |
23141238 |
T |
|
| Q |
125 |
ttgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttggg |
224 |
Q |
| |
|
|| |||||| |||| |||||||| || ||||| |||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
23141237 |
ttctttcaaaatctgcatttggcaagaagtgcaacgaccaagacaaatttatatcagcagtaaaagagttaataaagattgcagcaggttttgacttaga |
23141138 |
T |
|
| Q |
225 |
tgatttgtttccttc |
239 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
23141137 |
agacttgtttccttc |
23141123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 23149947 - 23149714
Alignment:
| Q |
25 |
attagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatacacaa |
124 |
Q |
| |
|
||||||||||| | |||| |||||| |||| | ||||||||| || | |||||||| |||||| ||||| |||||||| ||||| |||||||| | |
|
|
| T |
23149947 |
attagagaagaagagctctctaatcttgtcaaatggattgcttcgaaggaaggatcacccatcaacctcactcaagctgtaatttctataatatacacca |
23149848 |
T |
|
| Q |
125 |
ttgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttggg |
224 |
Q |
| |
|
||||||||| |||||||||||||| || | |||||||||||| ||||||||||||| |||||||| | |||||| | |||||||||||| |||| | |
|
|
| T |
23149847 |
ttgtttcaaaagctgcctttggcaagaagttcaaagaccaagacaaatttatatcagcagtaaaagagttagtaaaggtggcagcaggttttaacttagc |
23149748 |
T |
|
| Q |
225 |
tgatttgtttccttcttctaaatggcttcaatat |
258 |
Q |
| |
|
||||| ||||||||| || |||||| |||||| |
|
|
| T |
23149747 |
agatttctttccttctattacatggctgcaatat |
23149714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 479
Target Start/End: Complemental strand, 23149589 - 23149496
Alignment:
| Q |
386 |
aagatctggtagacattctcttaaaatatgaggatggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
479 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||| || || | || || | || || |||||||||||||||||||||||||||||||| |
|
|
| T |
23149589 |
aagatctggtagatgttctcataaaatatgaagatggcagcaacaaggaatttttcttgaccaaagacaatatcaaggccataatcttggtaag |
23149496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 23140923 - 23140886
Alignment:
| Q |
442 |
ttaacaaaagacaatatcaaggccataatcttggtaag |
479 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
23140923 |
ttaactaaagacaatatcaaggccataatcctggtaag |
23140886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 501
Target Start/End: Complemental strand, 21781008 - 21780526
Alignment:
| Q |
21 |
accgattagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatac |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| | ||||| |||| |||||||||| ||||||||| ||||| |||||||| |||||| ||||| |
|
|
| T |
21781008 |
accgattagagaagaggtgctctccaatcttgtcagatggattgtttcacagaatggatcgccaatcaacctcactcaagctgtaacttcttcagtatac |
21780909 |
T |
|
| Q |
121 |
acaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgact |
220 |
Q |
| |
|
|| |||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| || ||||||||||| | | |
|
|
| T |
21780908 |
actattgtttcgaggtccgcctttggaaataaatgcaaagaccaagaaaaatttatatcagttataaaacaatcgataaaagtttcagcaggttttaatt |
21780809 |
T |
|
| Q |
221 |
tgggtgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatatttgagaa |
320 |
Q |
| |
|
|||| ||||||||||||||| |||||||| || || ||||||| || |||||||||||| |||||| ||||| | |||||| ||| |||||||||| || |
|
|
| T |
21780808 |
tgggagatttgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaa |
21780709 |
T |
|
| Q |
321 |
catcattgatgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggat |
420 |
Q |
| |
|
|||||| | || |||||| || |||| |||||||| |||| ||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
21780708 |
catcatcaaggaccataaagaggcaaagcacacaaaaccgaaagaagatgaaggtgaagtagaagaagatctcgtagacgttctcttaaaatatgaggat |
21780609 |
T |
|
| Q |
421 |
ggtagtgaccaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag--tagtaacctcttccaaatactt |
501 |
Q |
| |
|
||||| ||| ||||| || ||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
21780608 |
ggtagcaacctggatttttccttaacaaaagacaatatcaaggccataataatggtaagccaattaatctcttccaaatactt |
21780526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 28 - 479
Target Start/End: Original strand, 5452 - 5900
Alignment:
| Q |
28 |
agagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcaccaatcaacttcactgaagctgtactttcttcgatatacacaattg |
127 |
Q |
| |
|
|||||||| ||| |||| ||||| |||| | ||||||||||||||| |||||||||||||| |||| ||||| || ||||||| ||||||||||||| |
|
|
| T |
5452 |
agagaagatgttctctctgatcttgtcaaatggattgcttcagagaacggatcaccaatcaatctcacaaaagctttaatttcttcaatatacacaattg |
5551 |
T |
|
| Q |
128 |
tttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttgggtga |
227 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||| ||||||||||||||| || |
|
|
| T |
5552 |
tttcgagggcagcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaacaaacaataaggattgcaggaggttttgacttgggaga |
5651 |
T |
|
| Q |
228 |
tttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatatttgagaacatcatt |
327 |
Q |
| |
|
||||||||| ||| |||||||||| ||| | ||||| ||||||||||||||| |||||| |||||| |||||| ||| | ||| |||| |||||||| |
|
|
| T |
5652 |
tttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaactgatcaaatacttgaaaacatcatc |
5751 |
T |
|
| Q |
328 |
gatgaacataaaagggtaaagtacacaaaagtcaaaggtgatcaaggtgaggtagcagaagatctggtagacattctcttaaaatatgaggatggtagtg |
427 |
Q |
| |
|
|||| |||||| | || ||| |||| | |||| ||| ||||||| || ||||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
5752 |
aatgagcataaagaagcaagatacggaaaattaaaagaggatgaaggtga---agaagaagatctattagacgttctcttaaaatatgaagatggtagca |
5848 |
T |
|
| Q |
428 |
accaagatttctcattaacaaaagacaatatcaaggccataatcttggtaag |
479 |
Q |
| |
|
|| | || || || |||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
5849 |
acaaggagttttccttaacaaaagacaatatcaaagccattatcatggtaag |
5900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 15885142 - 15885210
Alignment:
| Q |
210 |
aggttttgacttgggtgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaa |
278 |
Q |
| |
|
|||||||||| | ||||| |||||||||| ||||||||| ||||| |||| |||||||||||||||| |
|
|
| T |
15885142 |
aggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaa |
15885210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 12610914 - 12610838
Alignment:
| Q |
202 |
attgcagcaggttttgacttgggtgatttgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaa |
278 |
Q |
| |
|
||||||| |||||||||| | | ||| || |||||||| | |||||||||||| |||| |||||||||||||||| |
|
|
| T |
12610914 |
attgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaa |
12610838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 15885063 - 15885103
Alignment:
| Q |
128 |
tttcaagggctgcctttggcaataaatgcaaagaccaagaa |
168 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
15885063 |
tttcaagggctgcatttggaaacaaatgcaaagaccaagaa |
15885103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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