View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_10 (Length: 544)
Name: NF1627_low_10
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 193 - 528
Target Start/End: Complemental strand, 14108271 - 14107932
Alignment:
| Q |
193 |
aaacgtgtttatttatcatagtgtatgatttgcttcaaagcgagtatttctactataatat--gcttccnnnnnnnnntctccaggacgtcacttgaatg |
290 |
Q |
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| T |
14108271 |
aaacgtgtttatttatcatagtgtatgatttgcttcaaagcgagtatttctactataatatatgcttccaaaaaaaa-tctccaggacgtcacttgaatt |
14108173 |
T |
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| Q |
291 |
tctttgttggagtttcctacaaaatgatcactttgttcttcgggacaagcattgactttggttttcatggtcttcgatatactttaccgaacacttaaca |
390 |
Q |
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| T |
14108172 |
tctttgttggagtttcctacaaaatgatcactttgttcttcgggacaagcattgactttggttttcatggtcttcgatatactttaccgaacacttaaca |
14108073 |
T |
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| Q |
391 |
cgccttaagggataaattgttctcaagaaaacaaatgatgggtcattgaaagttacgtaacttgttcaacactcataattttaataatatggtaattaag |
490 |
Q |
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| T |
14108072 |
cgccttaagggataaattgttctcaagaaaacaaatgatgggtcattgaaagttacgtaacttgttcaacactcataattttaataatatggtaattaag |
14107973 |
T |
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| Q |
491 |
gatggggtttac---actaacttagattaatgttgggtcat |
528 |
Q |
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| T |
14107972 |
gatggggtttaccagactaacttagatgaatgttggttcat |
14107932 |
T |
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