View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_15 (Length: 513)

Name: NF1627_low_15
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_15
NF1627_low_15
[»] chr3 (9 HSPs)
chr3 (200-360)||(5565257-5565417)
chr3 (58-191)||(5565170-5565302)
chr3 (158-274)||(31896518-31896633)
chr3 (76-156)||(14175288-14175364)
chr3 (158-274)||(31945875-31945990)
chr3 (247-292)||(13539573-13539618)
chr3 (158-274)||(31912227-31912342)
chr3 (83-120)||(13539487-13539524)
chr3 (158-274)||(31688234-31688349)
[»] chr8 (1 HSPs)
chr8 (20-117)||(43618600-43618697)
[»] chr2 (1 HSPs)
chr2 (393-461)||(274714-274782)
[»] chr7 (1 HSPs)
chr7 (68-120)||(7854246-7854298)
[»] chr4 (1 HSPs)
chr4 (60-121)||(31952902-31952963)
[»] scaffold0007 (1 HSPs)
scaffold0007 (91-169)||(257658-257735)
[»] scaffold0003 (1 HSPs)
scaffold0003 (175-274)||(42747-42845)
[»] chr6 (1 HSPs)
chr6 (175-274)||(27444516-27444614)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 200 - 360
Target Start/End: Original strand, 5565257 - 5565417
Alignment:
Q  200 gagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttcttttattttgcaaggttaattgttat 299  Q
    |||||| |||||||| ||||| ||| |||| ||||||||||| ||| || ||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  5565257 gagttgcaccaccgtcgttgaccactgcgtcggaattcgctcttcaccgtgtcgatgtcactgtcagaagcttcttttattttgcaaggttaattgttat 5565356  T
Q  300 tttcagttttcgtattcctcatttctaatactgaatcattcgttgattatgatctttgttt 360  Q
    |||| | ||| |||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  5565357 tttctgcttttgtattcctcatttctaatactgaatcattcattgatgttgatctttgttt 5565417  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 5565170 - 5565302
Alignment:
Q  58 ttttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccac 157  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  5565170 tttttcagccttctcccactaaagtaaaagcatcatagtcttaatctcttcgtcctctac-aaaacccacttgttttccaccacgccggagttgcaccac 5565268  T
Q  158 catcgttgaccatcgcatcggaatttgctcttca 191  Q
    | ||||||||||  || |||||||| ||||||||    
T  5565269 cgtcgttgaccactgcgtcggaattcgctcttca 5565302  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 31896633 - 31896518
Alignment:
Q  158 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 257  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||||| | ||    
T  31896633 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgtcagtgt 31896535  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31896534 cgctgttagaagcttct 31896518  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 14175364 - 14175288
Alignment:
Q  76 ctaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcacca 156  Q
    ||||||||||||||||   |||||||| ||||| |||||||||||| |||| ||||||||||||||| |||||||||||||    
T  14175364 ctaaagtaaaagcatc---gtcttcatttcttcgtcctctacaaaa-cccatttgctttccaccacgccggagttgcacca 14175288  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 31945990 - 31945875
Alignment:
Q  158 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 257  Q
    |||||||||||| ||| ||||||| ||||||| | ||| || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||| | | ||    
T  31945990 catcgttgaccaccgcgtcggaatatgctcttaaccgcgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31945892  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31945891 cgctgttagaagcttct 31945875  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 13539573 - 13539618
Alignment:
Q  247 cgcgtcggggtcgctgtcagaagcttcttttattttgcaaggttaa 292  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||    
T  13539573 cgcgtcgggtttgctgtcagaagcttcttttattttgcaaggttaa 13539618  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 31912342 - 31912227
Alignment:
Q  158 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 257  Q
    |||||||||||| ||| ||||||| ||||||| | ||  || |||||| |||||| ||||| |||||||||| || |||||||| ||| |||| | | ||    
T  31912342 catcgttgaccaccgcgtcggaatatgctcttaaccgtgccggagttgcaccacccttgttaatcaccgcgtcgg-attcgctcttcatcgcgccagtgt 31912244  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31912243 cgctgttagaagcttct 31912227  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 13539487 - 13539524
Alignment:
Q  83 aaaagcatcatcgtcttcatctcttcatcctctacaaa 120  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13539487 aaaagcatcattgtcttcatctcttcatcctctgcaaa 13539524  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 31688234 - 31688349
Alignment:
Q  158 catcgttgaccatcgcatcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggt 257  Q
    |||||||||||| ||| || |||| ||||||| | |||  | |||||| |||||| ||||| ||||||||||  | |||||||| ||| |||| | | ||    
T  31688234 catcgttgaccaccgcgtcagaatatgctcttaaccgcgtcggagttgcaccacccttgttaatcaccgcgtcag-attcgctcttcatcgcgccagtgt 31688332  T
Q  258 cgctgtcagaagcttct 274  Q
    |||||| ||||||||||    
T  31688333 cgctgttagaagcttct 31688349  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 43618697 - 43618600
Alignment:
Q  20 acacaaaaactcttcttcttattccctcatttcgttaattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctac 117  Q
    |||||||||| ||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43618697 acacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcttctac 43618600  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 274714 - 274782
Alignment:
Q  393 acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttctaatcattcattt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  274714 acaagatattaccattactggtgccagcaccttgcctggtgatgaggtatatcttccaatcattcattt 274782  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 7854246 - 7854298
Alignment:
Q  68 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7854246 ttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctgcaaa 7854298  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 31952963 - 31952902
Alignment:
Q  60 ttttagccttctcccactaaagtaaaagcatcatcgtcttcatctcttcatcctctacaaaa 121  Q
    |||| |||| ||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  31952963 ttttggcctcctcccactaaaataaagccatcatcatcttcatctcttcatcctctacaaaa 31952902  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 257658 - 257735
Alignment:
Q  91 catcgtcttcatctcttcatcctctacaaaaacccacttgctttccaccacgtcggagttgcaccaccatcgttgacca 169  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||||| ||||| |||||||  |||||  ||||||||||    
T  257658 catcgtcttcatttcttcgtcctctac-aaaacccatttgctttcctccacgccggagttaaaccactgtcgttgacca 257735  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 42845 - 42747
Alignment:
Q  175 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttct 274  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| | | |||  | | |||||||| ||||||||||    
T  42845 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 42747  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 27444516 - 27444614
Alignment:
Q  175 tcggaatttgctcttcatcgcaccagagttgaaccaccgttgttgatcaccgcgttggaattcgctcctcaacgcgtcggggtcgctgtcagaagcttct 274  Q
    ||||||| ||||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| | | |||  | | |||||||| ||||||||||    
T  27444516 tcggaatatgctcttaaccgcgccggagttgaaccaccgttgttaatcaccgcgtcgg-attcgctctttatcgcaccagtgtcgctgttagaagcttct 27444614  T

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