View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_17 (Length: 505)
Name: NF1627_low_17
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 37645619 - 37646112
Alignment:
| Q |
1 |
atttctgctgctaccattctgtgtggtgcatctctagcaagtggatggaatatacaggtaatcctaacacttgctacagagagaatacaactgttttctt |
100 |
Q |
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| T |
37645619 |
atttctgctgctaccattctgtgtggtgcatctctagcaagcggatggaatatacaggtaatcctaacacttgctacagagagaatacaactgttttctt |
37645718 |
T |
|
| Q |
101 |
gcttagtttctattataatttggaattagagggaaagagtgacaaaaggtgaaaaacaatagaaaatgaatatagagaatttaagataaactttagttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37645719 |
gcttagtttctattataatttggaattagagggaaagagtgacaaaaggtgaaaaacaatagaaaatgaatatagagaatttaagagaaactttagttta |
37645818 |
T |
|
| Q |
201 |
atcttaactatctttctgtacaatagcaagaaaaaatgactaactttctaaagattaataaaaatgaagttgtgcctatacatttgtagaggttcagaaa |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37645819 |
atcttaactatctttctgtacaatagccagaaaaaatgactaactttctaaatattaataaaaatgaagttgtgcttatacatttgtagaggttcagaaa |
37645918 |
T |
|
| Q |
301 |
catttgtaggatgtgtgttaaaagtctcacattggatgagacaagtgttgtgcataagtttatataagtgggggcaatcgtcaccatacaagttggtttt |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
37645919 |
catatgtaggatgtgtgttaaaagtctcacattggatgagacaagtgttgtgcataagtttatataagtgggggcagtcttcaccatacaagttggtttt |
37646018 |
T |
|
| Q |
401 |
gtaatggttgaggtagaccccaccctagtgctaagagttatcaacgtccaaatgttattggcttgagaaaggagtaatgaaccatcttttaggc |
494 |
Q |
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| T |
37646019 |
gtaagggatgagttagaccccacccaagttctaagagttaacaaattccaaatgttattggcttgagaaaggagtaatgaaccatcttttaggc |
37646112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 19824503 - 19824559
Alignment:
| Q |
54 |
acaggtaatcctaacactt--gctacagagagaatacaactgttttcttgcttagtt |
108 |
Q |
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| T |
19824503 |
acaggtaatcctaacactttagctacagagaaaatacaactgttttcttgcttagtt |
19824559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19827553 - 19827615
Alignment:
| Q |
1 |
atttctgctgctaccattctgtgtggtgcatctctagcaagtggatggaatatacaggtaatc |
63 |
Q |
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| T |
19827553 |
atttctgccgctactattatgtgcggtgcatctctagcacgtggatggaatgcacaggtaatc |
19827615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 4098474 - 4098435
Alignment:
| Q |
363 |
tataagtgggggcaatcgtcaccatacaagttggttttgt |
402 |
Q |
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| T |
4098474 |
tataagtgggggcaatcctcaccttacaagttggttttgt |
4098435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 369647 - 369688
Alignment:
| Q |
363 |
tataagtgggggcaatcgtcaccatacaagttggttttgtaa |
404 |
Q |
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| T |
369647 |
tataagtgggggcaatcctcaccttacaagatggttttgtaa |
369688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 45668707 - 45668642
Alignment:
| Q |
4 |
tctgctgctaccattctgtgtggtgcatctctagcaagtggatggaatatacaggtaatcctaaca |
69 |
Q |
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| T |
45668707 |
tctgctgctaccattctttgtggagcatctctagtacgtgggtggaatgtgcaggtgatcttaaca |
45668642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 19385716 - 19385744
Alignment:
| Q |
313 |
gtgtgttaaaagtctcacattggatgaga |
341 |
Q |
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| T |
19385716 |
gtgtgttaaaagtctcacattggatgaga |
19385744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 10485396 - 10485424
Alignment:
| Q |
313 |
gtgtgttaaaagtctcacattggatgaga |
341 |
Q |
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| T |
10485396 |
gtgtgttaaaagtctcacattggatgaga |
10485424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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