View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_19 (Length: 500)

Name: NF1627_low_19
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_19
NF1627_low_19
[»] chr5 (4 HSPs)
chr5 (19-497)||(40846158-40846641)
chr5 (358-414)||(40609387-40609443)
chr5 (299-374)||(8783628-8783703)
chr5 (428-479)||(40608819-40608870)
[»] chr8 (2 HSPs)
chr8 (288-406)||(7256114-7256231)
chr8 (291-347)||(44260319-44260375)
[»] chr7 (5 HSPs)
chr7 (306-405)||(4262424-4262523)
chr7 (291-407)||(4278212-4278326)
chr7 (428-482)||(4278121-4278175)
chr7 (299-374)||(18703460-18703535)
chr7 (292-369)||(7331135-7331212)
[»] chr4 (8 HSPs)
chr4 (428-498)||(29381389-29381459)
chr4 (293-368)||(34747100-34747175)
chr4 (367-481)||(29380911-29381021)
chr4 (290-378)||(8492105-8492192)
chr4 (294-377)||(25735393-25735476)
chr4 (269-375)||(29380560-29380666)
chr4 (331-385)||(29381448-29381501)
chr4 (292-369)||(2520271-2520348)
[»] chr6 (1 HSPs)
chr6 (292-356)||(26275452-26275516)
[»] chr2 (2 HSPs)
chr2 (292-369)||(29982175-29982252)
chr2 (292-369)||(37644429-37644506)
[»] chr1 (2 HSPs)
chr1 (292-369)||(32517526-32517603)
chr1 (292-369)||(45880779-45880856)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 40846158 - 40846641
Alignment:
Q  19 taattggcctcctcaaaattttcaatcaatctgatcgtaactcttgat--------------gtaaaccttaatcgggtcatattttccaatcannnnnn 104  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||              |||||||||||| |||||||||||||||||||          
T  40846158 taattggccccctcaaaattttcaatcgatttgatcgtaactcttgatcaatttttttatatgtaaaccttaattgggtcatattttccaatcatttttt 40846257  T
Q  105 nnncatgaatatgagcaattttggagggtttattgagcaatcgtcattttaatatgtaatatggttttccatattaataaggctcggttcacttcgaata 204  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  40846258 tttcatgaatatgagcaattttggagggtttattgagcaatcgtcattttaatatgtcatatggttttccatactaataaggctcggttcactttgaata 40846357  T
Q  205 gacccaagcccttacatgtagggcacacaaaaagggacatcgattgtttcgtcccaaaacttcatggaggtttcttttt-ggggctccatatctctttag 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  40846358 gacccaagcccttacatgtagggcacacaacaagggacatcgattgtttcgtcccaaaacttcatggaggtttctttttagggcccccatatctctttag 40846457  T
Q  304 gccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttatgcttctagtagataac 403  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40846458 gccctccaaaattacaaaattgtccttaataacacttccggtagataaatacctgaggttcatttttaaaaatttcgattttgtgcttctagtagataac 40846557  T
Q  404 tcccgaaagtgcnnnnnnnnnnnnaattttgattttgttactctggtacataactactgtaagtgtatttttaaaattccgcctttgctactcc 497  Q
    ||||||||||||            |||||||||||||||||||||||| ||||||      ||||||||||||||||||||| |||| ||||||    
T  40846558 tcccgaaagtgc----ttttgtttaattttgattttgttactctggtagataact------agtgtatttttaaaattccgcttttgttactcc 40846641  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 40609443 - 40609387
Alignment:
Q  358 gaggttcatttttaaaaatttcgattttatgcttctagtagataactcccgaaagtg 414  Q
    |||||||||||||||| ||||||||||| ||||||   |||||||||||||||||||    
T  40609443 gaggttcatttttaaacatttcgattttgtgcttccgctagataactcccgaaagtg 40609387  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 8783628 - 8783703
Alignment:
Q  299 tttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaa 374  Q
    ||||||||||||||||||| |||||||||||||  ||||| |  ||||| ||| |||  ||| |||||||||||||    
T  8783628 tttaggccctccaaaattataaaattgtccttacaaacacatttggtagttaactactggagtttcatttttaaaa 8783703  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Original strand, 40608819 - 40608870
Alignment:
Q  428 aattttgattttgttactctggtacataactactgtaagtgtatttttaaaa 479  Q
    |||||||||| |||||||| |||| ||||||| || ||||||||||||||||    
T  40608819 aattttgattatgttactccggtagataactattggaagtgtatttttaaaa 40608870  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 406
Target Start/End: Complemental strand, 7256231 - 7256114
Alignment:
Q  288 ctccatatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttat 387  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||| |||| |||||| ||||||||||| ||||||||| |    
T  7256231 ctccatatctctttaggcccttcaaaattacaaaattgtccttgataacacttccggtagttaactaccggaggtttatttttaaaaa-ttcgattttgt 7256133  T
Q  388 gcttctagtagataactcc 406  Q
     |||| |||| ||||||||    
T  7256132 tcttccagtaaataactcc 7256114  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 44260319 - 44260375
Alignment:
Q  291 catatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtag 347  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||| ||| ||||    
T  44260319 catatctctttagcccctctaaaattacaaaattgttcttaataacacgtcatgtag 44260375  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 405
Target Start/End: Complemental strand, 4262523 - 4262424
Alignment:
Q  306 cctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttatgcttctagtagataactc 405  Q
    |||| |||||||||||| |||||||||||||||| | | ||| ||| || | ||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  4262523 cctctaaaattacaaaactgtccttaataacactcctgatagttaactatcagaggttcatttttaaaaattttgattttgtgcttccagtagataactc 4262424  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 4278326 - 4278212
Alignment:
Q  291 catatctctttaggccctcc-aaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgattttatgc 389  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||   |||| ||| |||| ||||||||||||  |||||||| | ||| |||    
T  4278326 catatctctttaggcccccctaaaattagaaaattgtccttaataacactt---gtagttaactaccggaggttcattttataaaatttcaaatttgtgc 4278230  T
Q  390 ttctagtagataactccc 407  Q
    ||| ||||||||||||||    
T  4278229 ttccagtagataactccc 4278212  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 4278175 - 4278121
Alignment:
Q  428 aattttgattttgttactctggtacataactactgtaagtgtatttttaaaattc 482  Q
    ||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  4278175 aatttcgattttgttactccggtaaataactactgcaagtgtatttttaaaattc 4278121  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 18703535 - 18703460
Alignment:
Q  299 tttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaa 374  Q
    ||||||||| ||||||||| ||||||||||||| |||||| || ||||| ||| || | |||||||||| ||||||    
T  18703535 tttaggccccccaaaattataaaattgtccttactaacacatctggtagttaactatcagaggttcattcttaaaa 18703460  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 7331135 - 7331212
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 369  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  7331135 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 7331212  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 29381459 - 29381389
Alignment:
Q  428 aattttgattttgttactctggtacataactactgtaagtgtatttttaaaattccgcctttgctactcca 498  Q
    ||||| |||||||||||||||||| | |||||| | |||||||||||||||||| ||| |||| |||||||    
T  29381459 aatttcgattttgttactctggtaaacaactaccggaagtgtatttttaaaatttcgcttttgttactcca 29381389  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 368
Target Start/End: Original strand, 34747100 - 34747175
Alignment:
Q  293 tatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcattt 368  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| |   |||||||| |||| || ||||||||    
T  34747100 tatctctttaggcctcctaaaattacaaaattgtccttaataacacgttttgtagataactaccggatgttcattt 34747175  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 481
Target Start/End: Original strand, 29380911 - 29381021
Alignment:
Q  367 ttttaaaaatttcgattttatgcttctagtagataactcccgaaagtgcnnnnnnnnnnnnaattttgattttgttactctggtacataactactgtaag 466  Q
    ||||||||||||| ||||| |||||| ||||||||||||||| ||||||            ||||| ||||||||||||  |||| |||||||| | |||    
T  29380911 ttttaaaaatttcaattttgtgcttccagtagataactcccggaagtgc----ttttttgaaatttagattttgttactgcggtagataactaccggaag 29381006  T
Q  467 tgtatttttaaaatt 481  Q
    |||||||||||||||    
T  29381007 tgtatttttaaaatt 29381021  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 378
Target Start/End: Original strand, 8492105 - 8492192
Alignment:
Q  290 ccatatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaattt 378  Q
    |||||||||||||  ||| ||||||||||||||||||| |||||||||| | |||||| ||| ||   || ||| ||||||||||||||    
T  8492105 ccatatctctttaaaccc-ccaaaattacaaaattgtctttaataacacattaggtagttaactattggacgtttatttttaaaaattt 8492192  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 377
Target Start/End: Complemental strand, 25735476 - 25735393
Alignment:
Q  294 atctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttttaaaaatt 377  Q
    |||||||| ||||| | |||| ||| ||||||| ||||||||||| ||| |||||||| |||| || ||||||||  |||||||    
T  25735476 atctcttttggccccctaaaaatacgaaattgttcttaataacacatcatgtagataattaccggatgttcatttaaaaaaatt 25735393  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 375
Target Start/End: Original strand, 29380560 - 29380666
Alignment:
Q  269 tggaggtttctttttggggctccatatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcattt 368  Q
    ||||||||||||||| || | |  |||||||| ||| || ||||||||   |||||||| |||||||||||||   ||||||||||   |||||||||||    
T  29380560 tggaggtttctttttaggcccctgtatctcttcaggtccaccaaaattgtcaaattgtctttaataacacttctaatagataaatattggaggttcattt 29380659  T
Q  369 ttaaaaa 375  Q
    || ||||    
T  29380660 tttaaaa 29380666  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 29381501 - 29381448
Alignment:
Q  331 aataacacttcaggtagataaatacctgaggttcatttttaaaaatttcgatttt 385  Q
    ||||||||||| |||||||||||| | || |||||||||| ||||||||||||||    
T  29381501 aataacacttccggtagataaatatcggatgttcattttt-aaaatttcgatttt 29381448  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 2520348 - 2520271
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 369  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  2520348 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 2520271  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 26275452 - 26275516
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacc 356  Q
    |||||||||||||||||| |||| ||||||| |  |||| |||| ||||| ||||||||||||||    
T  26275452 atatctctttaggccctctaaaaatacaaaaataacctttataagacttccggtagataaatacc 26275516  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 29982175 - 29982252
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 369  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  29982175 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 29982252  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 37644429 - 37644506
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 369  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  37644429 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 37644506  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 32517603 - 32517526
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 369  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  32517603 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 32517526  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 45880779 - 45880856
Alignment:
Q  292 atatctctttaggccctccaaaattacaaaattgtccttaataacacttcaggtagataaatacctgaggttcatttt 369  Q
    |||||||||||||||| | |||| ||||||| |  |||| |||| ||||| |||||||||||||| |  |||||||||    
T  45880779 atatctctttaggccccctaaaaatacaaaaataacctttataagacttccggtagataaataccggtagttcatttt 45880856  T

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