View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_20 (Length: 483)
Name: NF1627_low_20
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 37194717 - 37195039
Alignment:
| Q |
7 |
tccaagaatatctattaatactatcaatcatgtcctttaagttagcnnnnnnnnnnnnnnnattgaagagaatggcttctttattttcaactaaatatac |
106 |
Q |
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| T |
37194717 |
tccaagataatctattaatactatcaatcatgtcctttaagttagctatttttttt-----attgaagagaatggcttcttttttttcaactaaatatac |
37194811 |
T |
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| Q |
107 |
caacaagtagttaaccatattctttnnnnnnnn--gtagttaaacataaaatatgagttacnnnnnnnn--agcatgttttaagtataaagttttcaatg |
202 |
Q |
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| T |
37194812 |
caacaagtagttaaccatattctttaaaaaaaaaagtagttaaccataaaatatgagttacttttttttttagcatgttttaagtataaagttttcactg |
37194911 |
T |
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| Q |
203 |
tcgttcagcaaagattaatcattatttaaaaatctgtaagtttgtgatcgaactctttaccannnnnnnaaacgggccaaaattcttaccacttaaatca |
302 |
Q |
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| T |
37194912 |
tcgtttagcaaagattaatttttatttaaaaatctgtaagtttgtgatctaactctttaccattttcttaaac-ggccaaaattcttaccacttaaacca |
37195010 |
T |
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| Q |
303 |
atttatttgtgagacgttaactagacctc |
331 |
Q |
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| T |
37195011 |
atttatttgtgagacgttaactagacctc |
37195039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 468
Target Start/End: Original strand, 37195200 - 37195331
Alignment:
| Q |
337 |
tagtaagagaagtgatatggacactcnnnnnnnaaccttttaatactcactcttttatttatgaaatcaatgtggataccaaacattaaaaatggatctc |
436 |
Q |
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| T |
37195200 |
tagtaagagaagtgatatggacactctttttctaaccttctaacactcactcttttatttatgaaatcaatgtgggtaccaaacattaaaaatggatctc |
37195299 |
T |
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| Q |
437 |
atataaagtggtgcaacttacatgaatttcat |
468 |
Q |
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| T |
37195300 |
acataaagtggtgcggcttacatgaatttcat |
37195331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 8503830 - 8503881
Alignment:
| Q |
398 |
tgaaatcaatgtggataccaaacattaaaaatggatctcatataaagtggtg |
449 |
Q |
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| T |
8503830 |
tgaaatctatgtggataccgcacattaaaaatgaatctcacataaagtggtg |
8503881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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