View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_23 (Length: 443)

Name: NF1627_low_23
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_23
NF1627_low_23
[»] chr3 (3 HSPs)
chr3 (318-427)||(52710738-52710847)
chr3 (162-256)||(52710907-52710990)
chr3 (1-56)||(52711034-52711089)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 318 - 427
Target Start/End: Complemental strand, 52710847 - 52710738
Alignment:
Q  318 aagaaaattgctttaataggtttttaaggaataaaccccatcattttaaagacaactgctataaaccaatcgtttaagaaattataatatgaatgtatca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52710847 aagaaaattgctttaataggtttttaaggaataaaccccatcattttaaagacaactgctataaaccaatcgtttaagaaattataatatgaatgtatca 52710748  T
Q  418 atatcactat 427  Q
    ||||||||||    
T  52710747 atatcactat 52710738  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 52710990 - 52710907
Alignment:
Q  162 ttattgtgaatattatagtcaaatgcataataatttaggtacaatattaaaaaagtatttaaaaatttatttcaagagccaaaagatgaagctaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  52710990 ttattgtgaatattatagtcaaatgcataataatttaggtacaa-----------tatttaaaaatttatttcaagagccaaaagatgaagctaa 52710907  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52711089 - 52711034
Alignment:
Q  1 actaaacatttttgtatttatagtatggagccttctattgtccgtctcaaaaataa 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52711089 actaaacatttttgtatttatagtatggagccttctattgtccgtctcaaaaataa 52711034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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