View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1627_low_24 (Length: 443)
Name: NF1627_low_24
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 129 - 425
Target Start/End: Complemental strand, 46866307 - 46866011
Alignment:
| Q |
129 |
aaatgcagtgaatcttgaaaacaaggatgtaagaagcatgagacggtcaacgaccatcccatagtttgggaatcagaagacatactctaaagcctttact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46866307 |
aaatgcagtgaatcttgaaaacaaggatgtaagaagcatgagacggtcaacgaccatcccttagtttgggaatcagaatacatactctaaagcctttact |
46866208 |
T |
|
| Q |
229 |
ccaagcgatttttagaccatgaaaaaatctccacaactcagaatcaagaacattgcatccagcaccaactttggaagcacaaacaaataagaaatatcac |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46866207 |
ccaagcgatttttagaccatgaaaaaatctccacaactcagaatcaagaacattgcatccagcaccaactttggaagcacaaacaaataagaaatatcac |
46866108 |
T |
|
| Q |
329 |
cccttaggacacatccacaactaagccaagatatgttttgatatataaacgacacatataagataattacatttttcatatattaatatgattagat |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46866107 |
cccttaggacacatccacaactaagccaagatatgttttgatatataaacgacacatataagataattacatttttcatatattaatatgattagat |
46866011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 46867262 - 46867141
Alignment:
| Q |
11 |
gagatgaaattaacctgtgcatacaaatttcaagaccaaaatacctattcactcgtagtttttcttataaaaattataaagagttcatatctttctatag |
110 |
Q |
| |
|
||||| ||||||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46867262 |
gagataaaattaaccgatgtatacaaatttaaggaccaaaatacctattcactcgtagtttttcttataaaaattagaaagagttcatatctttctatag |
46867163 |
T |
|
| Q |
111 |
-tcttgattgacaacaccaaaa |
131 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46867162 |
ctcttgattgacaacaccaaaa |
46867141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 46886657 - 46886592
Alignment:
| Q |
236 |
atttttagaccatgaaaaaatctccacaactcagaatcaagaaca-ttgcatccagcaccaacttt |
300 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||| |||||| |||| | ||||||||||||| |
|
|
| T |
46886657 |
atttgtaggccatgaaaaattctccacaactcagaatctagaacatttgcgtgcagcaccaacttt |
46886592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 7001369 - 7001405
Alignment:
| Q |
28 |
tgcatacaaatttcaagaccaaaatacctattcactc |
64 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
7001369 |
tgcatacaaatttgaagaccaaaatgcctattcactc |
7001405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University