View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_25 (Length: 443)
Name: NF1627_low_25
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_25 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 4137035 - 4137481
Alignment:
| Q |
1 |
catccaacgcaacatcctcatctttactacacttattataacattagctctatgactacctgcaactcnnnnnnnnnnattgaatactaacaatagttga |
100 |
Q |
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|||||||| ||| ||||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
4137035 |
catccaacacaaaatcctcatctttattacacttattataatattagctccattactacctgcaactctttttttg---ttgaatactaacaatagttga |
4137131 |
T |
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| Q |
101 |
agctttgagttgctggatcattggccatttgatactaattagtaagattccttaacacaaaaatgaaaacttttgtacatgcagaatatatattaacaag |
200 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4137132 |
tgctttgagttgctggatccttgcccatttgatactaattagtaagattccttaacacaaaaatgaaaacttttgtacatgaagaatatatattaacaag |
4137231 |
T |
|
| Q |
201 |
gctgttattgtatctaatcttggagggagggagtacctga-------caccactgtggacctgcatagttcttagagaagacgataacagagactccaga |
293 |
Q |
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| T |
4137232 |
gctgttattgtatctaatctcggagggagggagtacctgagatttgacaccactgtggacctgcatagttcttagagaagacgataacagaaactctaga |
4137331 |
T |
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| Q |
294 |
agcatggatcccttgcagtagtgatgttgagatgtaatctcctctttgaagcgagtgatcgtccttgaagaaggtgaatccggcgtttcgaagagaagca |
393 |
Q |
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| T |
4137332 |
accatagatcccttgaagtagtgatgttgagatgtaatctcctctttgaagcgagtgatcgtccttgaagaaggtgaatccggcgtttcaaagagaagca |
4137431 |
T |
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| Q |
394 |
taaggctgtgaagtgaaagatgtacgggtatcttcgcctctgaaacttaa |
443 |
Q |
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| T |
4137432 |
taaggctgtgaagtgaaagatgtacgtgtatcttcgcctctgaaacttaa |
4137481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35559331 - 35559365
Alignment:
| Q |
1 |
catccaacgcaacatcctcatctttactacactta |
35 |
Q |
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| T |
35559331 |
catccaacgcaacatcctcatctttactacactta |
35559365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34869365 - 34869331
Alignment:
| Q |
1 |
catccaacgcaacatcctcatctttactacactta |
35 |
Q |
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| T |
34869365 |
catccaacgcaacatcctcatctctactacactta |
34869331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 443
Target Start/End: Complemental strand, 5422191 - 5422061
Alignment:
| Q |
313 |
agtgatgttgagatgtaatctcctctttgaagcgagtgatcgtccttgaagaaggtgaatccggcgtttcgaagagaagcataaggctgtgaagtgaaag |
412 |
Q |
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||||||||||| |||| |||||||||||||||||| | ||||||| |||| | | | |||| ||| ||||||||||||| | ||||||||||| | |
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| T |
5422191 |
agtgatgttgaaatgtgatctcctctttgaagcgaatcatcgtccctgaaaactttaattccgtaattttgaagagaagcatagagatgtgaagtgaatg |
5422092 |
T |
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| Q |
413 |
atgtacgggtatcttcgcctctgaaacttaa |
443 |
Q |
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||| ||| ||||| || ||||| |||||||| |
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| T |
5422091 |
atgcacgagtatcctctcctctaaaacttaa |
5422061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 5137709 - 5137767
Alignment:
| Q |
306 |
ttgcagtagtgatgttgagatgtaatctcctctttgaagcgagtgatcgtccttgaaga |
364 |
Q |
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| T |
5137709 |
ttgcaatagtgatgttgaaatgtgatctcctctttgaagtgaatcatcgtccatgaaga |
5137767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28245382 - 28245348
Alignment:
| Q |
1 |
catccaacgcaacatcctcatctttactacactta |
35 |
Q |
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| T |
28245382 |
catccaacgcaacatcctcatctttgctacactta |
28245348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 29817448 - 29817416
Alignment:
| Q |
2 |
atccaacgcaacatcctcatctttactacactt |
34 |
Q |
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| T |
29817448 |
atccaacgcaacatcctcatctttgctacactt |
29817416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49347730 - 49347764
Alignment:
| Q |
1 |
catccaacgcaacatcctcatctttactacactta |
35 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
49347730 |
catccaacgcaacatcctcatctttgctacactta |
49347764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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