View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_27 (Length: 431)
Name: NF1627_low_27
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 7553690 - 7554123
Alignment:
| Q |
1 |
tacttttcctaaaataattannnnnnnatcgtaaagctgtggagaattataagttgatgcaaggtagtaaaaatgagaagtctaaattgatattatccaa |
100 |
Q |
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| T |
7553690 |
tacttttcctaaaataattatttttttatcgtaaagctgtggagaattataagttgatgcaaggtagtaaaaatgagaagtctaaattgatattatccaa |
7553789 |
T |
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| Q |
101 |
agtaagtggtttaaannnnnnnnnnnnnnnnnnacgtgaataattaattactcactacttgtcaaaaacaaaattaattactcactat---atgatattt |
197 |
Q |
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| T |
7553790 |
agtaagtggtttaaattttgattttgattttttacgtgaataattaattactcactacttgtcaaaaacaaaattaattactcactattatatgatattt |
7553889 |
T |
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| Q |
198 |
atcctcaaaaatatctacaaaatctagtggtcaattcaattagctaatacaatttgggatttcaaatcacatgcacactaccaaaaacagaaaactctct |
297 |
Q |
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| T |
7553890 |
atcctcaaaaatatctacaaaatctagtggtcaattcaattagctaatacaatttgggatttcaaatcacatgcacactaccaaaaacagaaaactctct |
7553989 |
T |
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| Q |
298 |
tgcagatagtaaaatggataaataaactcttagttgcagcaacaaaaagtatataggttaaagttttgtccaaaaacgaatatcattatgtaattgcacc |
397 |
Q |
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| T |
7553990 |
tgcagataataaaatggataaataaactcctagttgcagcaacaaaaagtatataggttaaagttttgtccaaaaacgaatatcattatgtaattgcacc |
7554089 |
T |
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| Q |
398 |
atccaacaacataaaagaaacactacagagaata |
431 |
Q |
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| T |
7554090 |
atccaacaacataaaagaaacactacagagaata |
7554123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 8047618 - 8047572
Alignment:
| Q |
280 |
aaaaacagaaaactctcttgcagatagtaaaatggataaataaactc |
326 |
Q |
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| T |
8047618 |
aaaaacagaaaactctcttgcatataataaaatggataaataaactc |
8047572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 280
Target Start/End: Complemental strand, 48250053 - 48250023
Alignment:
| Q |
250 |
tttgggatttcaaatcacatgcacactacca |
280 |
Q |
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| T |
48250053 |
tttgggatttcaaatcacatgcacactacca |
48250023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 45056046 - 45056004
Alignment:
| Q |
387 |
gtaattgcaccatccaacaacataaaagaaacactacagagaa |
429 |
Q |
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| T |
45056046 |
gtaattgcaccatccaacaacataaaagaaaccctagagagaa |
45056004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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