View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_29 (Length: 408)

Name: NF1627_low_29
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_29
NF1627_low_29
[»] chr1 (2 HSPs)
chr1 (16-408)||(29166359-29166753)
chr1 (171-231)||(29173944-29174004)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 29166753 - 29166359
Alignment:
Q  16 atgtaggtaacaaatttagttgtaaaaaatgaggccaaaaatccaaaacataatttgatcaaatttctattacnnnnnnnaggtggtcttctaaaaatat 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||       ||||||||| ||||||||||    
T  29166753 atgtaggtaacaaatttagttgtaaaaaatgaggccaaaagtccaaaacataatttgataaaatttctattactttttttaggtggtctgctaaaaatat 29166654  T
Q  116 cttataactaattaagaaaaatgtaagttatagtgtaattttgtaaagatgacaaaggtgacaaatctagttatagaaaaagaggccaaaacataaattg 215  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29166653 cttataactaattaagaaaaatgtaagttacagtctaattttgtaaagatgccaatggtgacaaatctagttatagaaaaagaggccaaaacataaattg 29166554  T
Q  216 atctaatttctattacnnnnnnnnnnnnnnnnnngtggtttgatagaaatatcttatactagctaattaagaaaaaatta----agtgttaattttttnn 311  Q
    ||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||        
T  29166553 atctaatttctattac--ttttttttttgtttttgtggtttgatagaaatatcttatactagctaattaagaaaaaattaagttagtgttaattttaaaa 29166456  T
Q  312 nnnnnntatatttcattatttactcaaataaatttacgtttcttctaactatatgtaccctcaacctaccaattgtcatccttttttattatcatta 408  Q
           | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29166455 aaaaaaaaaaattcattatttactcaaataaatttacgtttcttctaactatatgtacccacaacctaccaattgtcatccttttttattatcatta 29166359  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 29174004 - 29173944
Alignment:
Q  171 aggtgacaaatctagttatagaaaaagaggccaaaacataaattgatctaatttctattac 231  Q
    |||| |||||| ||| |||| |||| ||||||||||||||| |||||| ||||| ||||||    
T  29174004 aggtaacaaatttagatatacaaaatgaggccaaaacataatttgatcaaatttgtattac 29173944  T

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