View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_30 (Length: 384)
Name: NF1627_low_30
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 1139659 - 1139842
Alignment:
| Q |
18 |
aaatcccaaatgacaatgaagattcataccaattttgaaattgttaatcgtatatatataattgaagaatatataacagaa------------------c |
99 |
Q |
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| T |
1139659 |
aaatctcaaatgacaatgaagattcatatcaattttgaaattgttaatcgtatata----attgaagaaaatataacagaaagagaaaaaaaaacagatc |
1139754 |
T |
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| Q |
100 |
attaaactacaaaaagataaatagaaccacaataatttgtgaaaagaaactaatctagaatgaaaaaataacctacaaaattggcata |
187 |
Q |
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| T |
1139755 |
attaaactacaaaaagataaatagaaccacaataatttgtgaaaagaaactaatttagaatgaaaaaataacctacaaaattggcata |
1139842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 1140352 - 1140399
Alignment:
| Q |
327 |
tttcctgttaattcctgtttttgccctcgtgaatccatgctacctatg |
374 |
Q |
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| T |
1140352 |
tttcctgttaattcctgtttttgccctcgtgaatccatgctacctatg |
1140399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 1139927 - 1139955
Alignment:
| Q |
276 |
cccatactcacgttaatgccttcactctt |
304 |
Q |
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| T |
1139927 |
cccatactcacgttaatgccttcactctt |
1139955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 1140240 - 1140272
Alignment:
| Q |
298 |
cactcttgacgatttaatggacggtttcttttc |
330 |
Q |
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| T |
1140240 |
cactcttcacgatttaatggacggtttcttttc |
1140272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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