View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_31 (Length: 383)

Name: NF1627_low_31
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_31
NF1627_low_31
[»] chr4 (11 HSPs)
chr4 (18-323)||(55664866-55665171)
chr4 (18-119)||(54861679-54861780)
chr4 (186-323)||(54627767-54627899)
chr4 (46-165)||(54627591-54627717)
chr4 (229-300)||(55636063-55636134)
chr4 (186-247)||(55635985-55636046)
chr4 (18-119)||(55658855-55658956)
chr4 (18-108)||(52985381-52985471)
chr4 (24-101)||(3671612-3671689)
chr4 (197-252)||(52985206-52985261)
chr4 (186-215)||(54861546-54861575)
[»] chr8 (2 HSPs)
chr8 (18-165)||(9890052-9890206)
chr8 (186-266)||(9890255-9890337)
[»] chr2 (2 HSPs)
chr2 (186-302)||(13402240-13402357)
chr2 (20-115)||(13401966-13402061)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 55665171 - 55664866
Alignment:
Q  18 gaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtcataatggat 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55665171 gaaggtacccatctccttcagtgttgactcctgtacttcacacgctgggaaatattgttgctggggacaatatgcagactcaggtaatgtcataatggat 55665072  T
Q  118 tgatataattagctgttacccaaatatttctaattaaatttaactttttattgcgtaaagaactatagattaaaatttgaaatattataacctgaaatca 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55665071 tgatataattagctgttacccaattatttctaattaaatttaactttttattgcgtaaagaactataaattaaaatttgaaatattataacctgaaatca 55664972  T
Q  218 ttgataggtatgttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggttgttgaagctggattgatagttatataaatatta 317  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55664971 ttgataggtatgttttgtaagtctaattttattaagagtaaacatcaaagtgcaataggatgtggttgttgaagctggattgatagttatataaatatta 55664872  T
Q  318 gcctag 323  Q
    ||||||    
T  55664871 gcctag 55664866  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 54861780 - 54861679
Alignment:
Q  18 gaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtcataatggat 117  Q
    ||||||||||||||||||||||| ||| ||||||  ||| |||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  54861780 gaaggcacccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatattgtaactggagacaatatgcagactcaggtaatgtcataatggat 54861681  T
Q  118 tg 119  Q
    ||    
T  54861680 tg 54861679  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 54627767 - 54627899
Alignment:
Q  186 attaaaatttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggttg 285  Q
    |||||||||||||||||||||  ||| ||| |||||| |||| |||||||||||||||||| |||||||||||||| |||| |||      |||||||||    
T  54627767 attaaaatttgaaatattatagtctgtaattattgattggtaagttttgtaagtctaatttgattaagagaaaacaccaaaatgc-----tatgtggttg 54627861  T
Q  286 ttgaagctggattgatagttatataaatattagcctag 323  Q
    |||||||| ||| || | || || ||||||||||||||    
T  54627862 ttgaagcttgatagagaattttagaaatattagcctag 54627899  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 54627591 - 54627717
Alignment:
Q  46 tcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtcataatgg-------attgatataattagctgttaccc 138  Q
    ||||| ||||| |||  |||||||||||||  |||||||  ||||||||||||||||| |||||||||||       |||| |||||||||||| ||||     
T  54627591 tcctgcacttcgcacagtgggaaatattgtatctggagatgatatgcagactcaggtattgtcataatggattgggaattgttataattagctgctacct 54627690  T
Q  139 aaatatttctaattaaatttaactttt 165  Q
    || |||||||||||||||||| |||||    
T  54627691 aattatttctaattaaatttacctttt 54627717  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 55636063 - 55636134
Alignment:
Q  229 gttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggttgttgaagctggattga 300  Q
    ||||||||| ||||||||||||||||||||||| |||| | | |||| ||||||||||||||||| ||||||    
T  55636063 gttttgtaactctaattttattaagagaaaacaccaaaatactatagtatgtggttgttgaagcttgattga 55636134  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 55635985 - 55636046
Alignment:
Q  186 attaaaatttgaaatattataacctgaaatcattgataggtatgttttgtaagtctaatttt 247  Q
    ||||||||||||||| || ||||||||||| ||||||||||| ||||||||| |||||||||    
T  55635985 attaaaatttgaaatgttgtaacctgaaattattgataggtaagttttgtaactctaatttt 55636046  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 55658956 - 55658855
Alignment:
Q  18 gaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtcataatggat 117  Q
    |||||| ||| |||||||||||||||||||||| |||||| ||| |||||||| || |    |  ||  |||||||||||||||||||||||||||||||    
T  55658956 gaaggcgcccgtctccttcagtgttgactcctgcacttcaaacggtgggaaattttataaaagtggatgatatgcagactcaggtaatgtcataatggat 55658857  T
Q  118 tg 119  Q
    ||    
T  55658856 tg 55658855  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 52985471 - 52985381
Alignment:
Q  18 gaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtc 108  Q
    ||||||||||||||||||||||| |||  |||||| ||  |||  | |||||||||||  |||||||| ||||||||||||| ||||||||    
T  52985471 gaaggcacccatctccttcagtgctgatacctgtaatttgcacaattggaaatattgtaactggagacgatatgcagactcaagtaatgtc 52985381  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 3671689 - 3671612
Alignment:
Q  24 acccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcagg 101  Q
    ||||||||||||||||| ||| ||||| ||| | ||| ||||||||||||||||  |||||| | |||||||||||||    
T  3671689 acccatctccttcagtggtgattcctgcactccgcacattgggaaatattgttggcggagacgacatgcagactcagg 3671612  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 52985261 - 52985206
Alignment:
Q  197 aaatattataacctgaaatcattgataggtatgttttgtaagtctaattttattaa 252  Q
    |||||||||| |||||||  |||||||||||  ||||||||||||||||| |||||    
T  52985261 aaatattatatcctgaaactattgataggtaaattttgtaagtctaatttgattaa 52985206  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 54861575 - 54861546
Alignment:
Q  186 attaaaatttgaaatattataacctgaaat 215  Q
    ||||||||||||||||||||||||||||||    
T  54861575 attaaaatttgaaatattataacctgaaat 54861546  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 9890052 - 9890206
Alignment:
Q  18 gaaggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtcataa----- 112  Q
    ||||| |||| |||||||||||| ||| ||||| ||||| ||| ||||||||||||||||  |||||| | ||||| ||||||||||||||||||         
T  9890052 gaaggaacccttctccttcagtggtgattcctgcacttcgcacattgggaaatattgttggcggagacgacatgcaaactcaggtaatgtcataattggt 9890151  T
Q  113 --tggattgatataattagctgttacccaaatatttctaattaaatttaactttt 165  Q
      ||||||| |  |||||| || ||||||| ||||||||||||||| ||||||||    
T  9890152 tgtggattgtttcaattagttgctacccaattatttctaattaaatctaactttt 9890206  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 9890255 - 9890337
Alignment:
Q  186 attaaaatttgaaatattataacctgaaatcattgataggtatgttttgta--agtctaattttattaagagaaaacatcaaa 266  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||||||||  |||||||||| ||||| |||||||| ||||    
T  9890255 attaaaatttgaaatattataacctgaaactattgataggtaagttttgtaagagtctaatttgattaatagaaaacaccaaa 9890337  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 13402240 - 13402357
Alignment:
Q  186 attaaaatttgaaatattataacct-gaaatcattgataggtatgttttgtaagtctaattttattaagagaaaacatcaaagtgcaataggatgtggtt 284  Q
    |||||||||||||||| ||||| || ||||| |||||||| ||  ||||| ||||||||||| ||| || ||||||| |||| ||| | || ||||||||    
T  13402240 attaaaatttgaaataatataaacttgaaattattgatagttaaattttgcaagtctaatttgatttagggaaaacaccaaaatgctaaagtatgtggtt 13402339  T
Q  285 gttgaagctggattgata 302  Q
    ||||||||| ||||||||    
T  13402340 gttgaagcttgattgata 13402357  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 13401966 - 13402061
Alignment:
Q  20 aggcacccatctccttcagtgttgactcctgtacttcacacgttgggaaatattgttgctggagacaatatgcagactcaggtaatgtcataatgg 115  Q
    ||||||||||||||||||||| |||  |||| ||||| |||| |||||||||||||| | |||||  ||   ||||||||||||||||||| ||||    
T  13401966 aggcacccatctccttcagtgctgatccctgcacttcgcacggtgggaaatattgttacgggagatgatgcacagactcaggtaatgtcatgatgg 13402061  T

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