View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_34 (Length: 355)
Name: NF1627_low_34
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 7096856 - 7096554
Alignment:
| Q |
18 |
agacaggttacgagacttccatgctatatatagacaaactggaatgctctttaaattttcagaatgttgagttttccatgaataaagataacagcaaaca |
117 |
Q |
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| T |
7096856 |
agacaggttacgagacttccatgctatatatagacaaactggaatgctctttaaattttcagaatgttgagttttccatgaataaagataacaacaaaca |
7096757 |
T |
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| Q |
118 |
tgtaacattctttttcagcgatgttcttgcagcatatgcttgttcaatgatgaatgccataaggatttcagtaattattccagttgaacctttatttgaa |
217 |
Q |
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| T |
7096756 |
tgtaacattctttttcagcgatgttcttgcagcatatgcttgttcgatgatgaatgccataaggatttcagtaattattccagttgaacctttatctgaa |
7096657 |
T |
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| Q |
218 |
gaatgtgaaaagaggtatgatagtttctaatcaccaaattagtttctaatcaccaaattaatttaaatttctatctgcgtgaatcacttgcttaatgtta |
317 |
Q |
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| T |
7096656 |
gaatgtgaaaagaggtatgatagtttctaatcaccaa-------------------attaatttaaatttctatctgcgtgaatcacttgcttaaggtta |
7096576 |
T |
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| Q |
318 |
ccaataaaaattctttgttcat |
339 |
Q |
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| T |
7096575 |
ccaataaaaattctttgttcat |
7096554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 32492452 - 32492577
Alignment:
| Q |
32 |
acttccatgctatatatagacaaactggaatg-ctctttaaattttcagaatgttgagttttccatgaataaa-gataacagcaaacatgtaacattctt |
129 |
Q |
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| T |
32492452 |
acttccattctatataaa-agaaactggaatggctcttttaacttgtaaaatgttgagttgtccatgaataaaagataacagtaaacatgtaacatcctt |
32492550 |
T |
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| Q |
130 |
tttcagcgatgttcttgcagcatatgct |
157 |
Q |
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| T |
32492551 |
tt-cagcgatgttcttgcagcatatgct |
32492577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 7584453 - 7584501
Alignment:
| Q |
276 |
taatttaaatttctatctgcgtgaatcacttgcttaatgttaccaataa |
324 |
Q |
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| T |
7584453 |
taatttaaatttctatctgcattaatcacttgcttaatgttaccaataa |
7584501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 49 - 323
Target Start/End: Complemental strand, 17981025 - 17980763
Alignment:
| Q |
49 |
agacaaactggaatgctctttaaattttcagaatgttgagttttccatgaataaa--gataacagcaaacatgtaacattctttttcagcgatgttcttg |
146 |
Q |
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| T |
17981025 |
agacagacttgaatgctctttagatttgcaaaatgttgagttttccatgaataaaaagataacagtaaatgtgtaacattctttt-cagcgatgttctcg |
17980927 |
T |
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| Q |
147 |
cagcatatgcttgttcaatgatgaatgccataaggatttcagtaattattccagttgaacctttatttgaagaatgtgaaaagaggtatgatagtttcta |
246 |
Q |
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|||||||| ||||| |||||||||||| || ||||||||||| || |||| ||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
17980926 |
cagcatatacttgtcacatgatgaatgccccaatgatttcagtaaatactcca-ttgaacctttatttgaagaatgtgagaaaaggtatgatagtttcta |
17980828 |
T |
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| Q |
247 |
atcaccaaattagtttctaatcaccaaattaatttaaatttctatctgcgtgaatcacttgcttaatgttaccaata |
323 |
Q |
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||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
17980827 |
atcgccaaataagtttc------------taatttaaatttctatctgcatgaatcacttgcttaatgttagcaata |
17980763 |
T |
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