View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1627_low_39 (Length: 320)
Name: NF1627_low_39
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 26885773 - 26885470
Alignment:
| Q |
1 |
attgcttggatacggtttcagtccgatatatcccttcctactgccatactaagacaagtggacgattacattaatgttaatccagctcaggacaactcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26885773 |
attgcttggatacggtttcagtccgatatatcccttcctactgccatactaagacaagtggacgattacattaatgttaatccagctcaggacaactcat |
26885674 |
T |
|
| Q |
101 |
ttcctcttcgtccacattctagccattttaaccttgttcctggtcttccaatagttgccgtgggccgttattttgccaaaccatttgatctcatggctgc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26885673 |
ttcctcttcatccacattctagccattttaaccttgttcctggtcttccaatagttgccgtgggccgttattttgccaaaccatttgatctcatggctgc |
26885574 |
T |
|
| Q |
201 |
tcccggtcaattcatgtaagtaagattagattagatacatctgttctaatttgtacatattagtttactttggcagctaagttcccttgttctaactctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26885573 |
tcccggtcaattcatgtaagtaagattagattagatacatctgttctaatttgtacatattagtttactttggcagctaagttcccttgttctaactctt |
26885474 |
T |
|
| Q |
301 |
gttt |
304 |
Q |
| |
|
|||| |
|
|
| T |
26885473 |
gttt |
26885470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 26631596 - 26631870
Alignment:
| Q |
1 |
attgcttggatacggtttcagtccgatatatcccttcctactgccatactaagacaagtggacgattacattaatgttaatccagctcaggacaa-ctcc |
99 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| || || || |
|
|
| T |
26631596 |
attgcttggatacagtttcagtctgatagatcccttcctactgcgatattaagacaagtggacgattacatcaatgttaatccagctgtggctaagctat |
26631695 |
T |
|
| Q |
100 |
tt--tcctcttcgtccacattctagccattttaaccttgttcctggtcttccaatagttgccgtgggccgttattttgccaaaccatttgatctcatggc |
197 |
Q |
| |
|
|| || || |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26631696 |
ttcgtcatcatcgtagacattctagccgttttaaccttgttcctggtcatccaatagttgccgtgggccgttattttgccaaaccatttgatctcatggc |
26631795 |
T |
|
| Q |
198 |
tgctcccggtcaattcatgtaagtaag-----attagattagatacatctgttctaatttgtacatattagttta |
267 |
Q |
| |
|
||||||||||||||||| || ||| || |||| |||| ||||| || ||| |||||||||||||||||||| |
|
|
| T |
26631796 |
tgctcccggtcaattcacgtcagttagattatattatattacatacaactcttcgaatttgtacatattagttta |
26631870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University