View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_40 (Length: 317)

Name: NF1627_low_40
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_40
NF1627_low_40
[»] chr3 (10 HSPs)
chr3 (69-261)||(45004358-45004550)
chr3 (246-306)||(45004002-45004062)
chr3 (131-176)||(22754761-22754806)
chr3 (129-177)||(39926477-39926525)
chr3 (134-179)||(51171086-51171131)
chr3 (136-179)||(16280912-16280955)
chr3 (46-144)||(25227342-25227440)
chr3 (150-179)||(16280575-16280604)
chr3 (136-177)||(44798745-44798786)
chr3 (136-176)||(39926413-39926453)
[»] chr4 (14 HSPs)
chr4 (16-217)||(43634265-43634452)
chr4 (247-306)||(43634453-43634512)
chr4 (129-179)||(46844622-46844672)
chr4 (136-181)||(5314398-5314443)
chr4 (136-185)||(23811319-23811367)
chr4 (136-180)||(23811350-23811394)
chr4 (131-177)||(45682811-45682857)
chr4 (130-185)||(5314359-5314415)
chr4 (48-108)||(32310396-32310456)
chr4 (136-179)||(32304743-32304786)
chr4 (132-182)||(10011622-10011672)
chr4 (132-182)||(10018763-10018813)
chr4 (48-109)||(25146874-25146935)
chr4 (48-89)||(26973307-26973348)
[»] chr2 (8 HSPs)
chr2 (129-178)||(24582535-24582584)
chr2 (136-178)||(24582470-24582512)
chr2 (136-179)||(3816277-3816320)
chr2 (56-123)||(5289776-5289843)
chr2 (54-109)||(28030432-28030487)
chr2 (48-127)||(42882455-42882534)
chr2 (136-185)||(24582495-24582545)
chr2 (47-123)||(41191332-41191408)
[»] chr1 (5 HSPs)
chr1 (129-185)||(32306406-32306462)
chr1 (136-180)||(21258316-21258360)
chr1 (136-181)||(19062888-19062933)
chr1 (136-181)||(32306445-32306490)
chr1 (136-177)||(32713247-32713288)
[»] chr5 (11 HSPs)
chr5 (132-181)||(17066848-17066897)
chr5 (136-179)||(20419551-20419594)
chr5 (112-177)||(3040062-3040127)
chr5 (131-185)||(20419513-20419568)
chr5 (136-176)||(17854694-17854734)
chr5 (132-183)||(2190333-2190384)
chr5 (136-179)||(14410733-14410776)
chr5 (134-181)||(18936713-18936760)
chr5 (136-178)||(25994590-25994632)
chr5 (136-178)||(25994911-25994953)
chr5 (137-178)||(126849-126890)
[»] chr7 (8 HSPs)
chr7 (129-185)||(34328605-34328661)
chr7 (129-191)||(9384639-9384701)
chr7 (136-178)||(23284773-23284815)
chr7 (129-176)||(11561423-11561470)
chr7 (133-175)||(43466745-43466787)
chr7 (136-173)||(34328644-34328681)
chr7 (136-180)||(9384678-9384722)
chr7 (152-180)||(47441665-47441693)
[»] chr6 (10 HSPs)
chr6 (134-180)||(9875774-9875820)
chr6 (48-127)||(5741523-5741602)
chr6 (136-181)||(9863453-9863498)
chr6 (136-185)||(9863519-9863568)
chr6 (48-107)||(4362453-4362512)
chr6 (136-175)||(32879736-32879775)
chr6 (48-106)||(5741178-5741236)
chr6 (129-185)||(9863551-9863607)
chr6 (136-176)||(26622233-26622273)
chr6 (136-176)||(26728211-26728251)
[»] chr8 (2 HSPs)
chr8 (129-175)||(31271851-31271897)
chr8 (136-174)||(13461231-13461269)
[»] scaffold0051 (1 HSPs)
scaffold0051 (48-91)||(21135-21178)
[»] scaffold0012 (1 HSPs)
scaffold0012 (137-175)||(36154-36192)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 69 - 261
Target Start/End: Complemental strand, 45004550 - 45004358
Alignment:
Q  69 acttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgccgcgcaacttaactcacgctgtaattaacacttgcgtgagt 168  Q
    |||||||||||||   ||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  45004550 acttttcgctcgcgctctgcagccttgctcaaaatacccctacgttagttaactaacgccacgcaacttaactcacgttggaattaacacttgcgtgagt 45004451  T
Q  169 taactcacgcaggaatttacaatagaatttccgcggaaatatttttccatttgaattcacgcagtgatttctaattccaaattccagtttctt 261  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  45004450 taactcacgcaggaatttacaatagaatttctgcataaatatttttccatttgaattcacgcagtgattactgattccaaattccagtttctt 45004358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 45004062 - 45004002
Alignment:
Q  246 caaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 306  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  45004062 caaaatccagtttcttattgttatccttttattccaatttagttgcttcctctttattcat 45004002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 22754761 - 22754806
Alignment:
Q  131 gcaacttaactcacgctgtaattaacacttgcgtgagttaactcac 176  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  22754761 gcaacttaactcacgctggaattaacacttgcgtgagttaactcac 22754806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 39926525 - 39926477
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacg 177  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  39926525 gcgcaacttaactcacgctggaattaacactttcgtgagttaactcacg 39926477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 51171086 - 51171131
Alignment:
Q  134 acttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  51171086 acttaagtcacgctgaaattaacacgtgcgtgagttaactcacgca 51171131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 16280955 - 16280912
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    ||||||||||| | |||||||||||| |||||||||||||||||    
T  16280955 ttaactcacgccgaaattaacacttgggtgagttaactcacgca 16280912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 25227440 - 25227342
Alignment:
Q  46 tcgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgccgcgcaacttaactcac 144  Q
    |||||||||||||||| ||| | ||||||||||||| |||||||||  | |  |||||| || ||  ||| ||||||||||| ||| ||||||| ||||    
T  25227440 tcgaattctgctcttccccctgcacttttcgctcgcgtcctgcagccatcctaaaaatatccttacgttacttaactaacgcagcgtaacttaagtcac 25227342  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 16280575 - 16280604
Alignment:
Q  150 aattaacacttgcgtgagttaactcacgca 179  Q
    ||||||||||||||||||||||||||||||    
T  16280575 aattaacacttgcgtgagttaactcacgca 16280604  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 44798786 - 44798745
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacg 177  Q
    |||| |||||||| || |||||||||||||||||||||||||    
T  44798786 ttaattcacgctggaactaacacttgcgtgagttaactcacg 44798745  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 39926453 - 39926413
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcac 176  Q
    |||| |||||||| ||||||||||||||||| |||||||||    
T  39926453 ttaattcacgctgaaattaacacttgcgtgaattaactcac 39926413  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 43634265 - 43634452
Alignment:
Q  16 cacatctaacatccttcgatctctatttcttcgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatatta 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||| |||||||| ||||||||||             
T  43634265 cacatctaacatccttcgatctctatttcttcgaattctactcttcacccagtactttttgctcgcaccctacagcgttgtccaaaatacc--------- 43634355  T
Q  116 gttaactaacgccgcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatttacaatagaatttccgcggaaatatttttc 215  Q
         |||||| |||||||||||||||||  |  |||||| |||| | |||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  43634356 ----tctaacgtcgcgcaacttaactcaccttaaaattaatacttacatgagttaactcacgcaggaatttacaatagaatttctgc-aaaatatttttc 43634450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 43634453 - 43634512
Alignment:
Q  247 aaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43634453 aaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 43634512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 46844672 - 46844622
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  46844672 gcgcaacttaactcacgttgaaattaacacttgcgtgagttaactcacgca 46844622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 5314398 - 5314443
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 181  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  5314398 ttaattcacgctggaattaacacttgcgtgagttaactcacgcagg 5314443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 23811319 - 23811367
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 185  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  23811319 ttaactcacgctgtaattaa-acttgcgtgagttaactcacgctggaatt 23811367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 23811350 - 23811394
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 180  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  23811350 ttaactcacgctggaattaacacttgcgtgagttatctcacgcag 23811394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 45682811 - 45682857
Alignment:
Q  131 gcaacttaactcacgctgtaattaacacttgcgtgagttaactcacg 177  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||    
T  45682811 gcaacttaactcacgttggaattaacacttgcctgagttaactcacg 45682857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 5314359 - 5314415
Alignment:
Q  130 cgcaacttaactcacgctgtaa-ttaacacttgcgtgagttaactcacgcaggaatt 185  Q
    |||||||||||| |||||| || |||||||||||||||||||| |||||| ||||||    
T  5314359 cgcaacttaacttacgctggaaattaacacttgcgtgagttaattcacgctggaatt 5314415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 32310456 - 32310396
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccc 108  Q
    |||||||||||||||||| |||||||||||||||  |||||| |||| || ||| ||||||    
T  32310456 gaattctgctcttcacccagtacttttcgctcgcgccctgcaccgttacctaaattacccc 32310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 32304786 - 32304743
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    ||||||||||||| ||||||||| || |||||||||||||||||    
T  32304786 ttaactcacgctgaaattaacacatgtgtgagttaactcacgca 32304743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 10011672 - 10011622
Alignment:
Q  132 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcagga 182  Q
    |||| ||| |||||||| ||| |||||||||||||||||||||| ||||||    
T  10011672 caacgtaattcacgctgaaatcaacacttgcgtgagttaactcatgcagga 10011622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 10018813 - 10018763
Alignment:
Q  132 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcagga 182  Q
    |||| ||| |||||||| ||| |||||||||||||||||||||| ||||||    
T  10018813 caacgtaattcacgctgaaatcaacacttgcgtgagttaactcatgcagga 10018763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 25146874 - 25146935
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccct 109  Q
    |||| |||||||||||||   |||||||||||||  |||||||||||||| ||| |||||||    
T  25146874 gaatgctgctcttcacccaacacttttcgctcgcgccctgcagcgttgcctaaattacccct 25146935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 26973307 - 26973348
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgca 89  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  26973307 gaattttgctcttcaccctgcacttttcgctcgcatcctgca 26973348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 24582584 - 24582535
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24582584 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgc 24582535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 24582512 - 24582470
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 178  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  24582512 ttaactcacgctggaattaacacttgcgtgagttaagtcacgc 24582470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 3816320 - 3816277
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||    
T  3816320 ttaactcacgttgtaattaacacctgcgtaagttaactcacgca 3816277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 5289776 - 5289843
Alignment:
Q  56 ctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaacta 123  Q
    |||||||||| | || |||||||||||||||||| |  ||||||||||||||||   |||||||||||    
T  5289776 ctcttcacccagcacatttcgctcgcatcctgcaaccatgcccaaaatacccctgcgttagttaacta 5289843  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 28030432 - 28030487
Alignment:
Q  54 tgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccct 109  Q
    |||||||||||| | |||||||||||||  |||||||||||||| ||| |||||||    
T  28030432 tgctcttcacccagcacttttcgctcgcgccctgcagcgttgcctaaattacccct 28030487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 42882455 - 42882534
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgc 127  Q
    |||||||||||||||||| | ||||||||||| |  ||||||||  || | ||||||||||||   ||||||||||||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgc 42882534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 24582545 - 24582495
Alignment:
Q  136 ttaactcacgctgt-aattaacacttgcgtgagttaactcacgcaggaatt 185  Q
    |||||||||||||  |||||||||||| |||||||||||||||| ||||||    
T  24582545 ttaactcacgctgggaattaacacttgagtgagttaactcacgctggaatt 24582495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 41191332 - 41191408
Alignment:
Q  47 cgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaacta 123  Q
    ||||||||||||||||||| | |  |||||||||||||||||||   ||| |||||| ||||| |  ||||||||||    
T  41191332 cgaattctgctcttcacccagcaaatttcgctcgcatcctgcagtcatgcgcaaaatgcccctgtgctagttaacta 41191408  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 32306406 - 32306462
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  32306406 gcgcaacttaactcacgctgaaattaacacttgcgtgagttaactcacgctggaatt 32306462  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 21258360 - 21258316
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 180  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  21258360 ttaactcacgctggaattaacacttgcgtgagttaactcacgcag 21258316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 19062933 - 19062888
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 181  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||||    
T  19062933 ttaactcacgctgaaattaacacttgcgtgaattaactcatgcagg 19062888  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 32306445 - 32306490
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 181  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  32306445 ttaactcacgctggaattgacacttgcatgagttaactcacgcagg 32306490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 32713247 - 32713288
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacg 177  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  32713247 ttaactcacgctaaaattaacacttgcgtgagttaactcacg 32713288  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 17066848 - 17066897
Alignment:
Q  132 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 181  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  17066848 caacttaactcacgctggaattaacacttgcatgagttaactcacgcagg 17066897  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 20419551 - 20419594
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  20419551 ttaactcacgctggaattaacacttgcgtgagttaactcacgca 20419594  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 3040127 - 3040062
Alignment:
Q  112 attagttaactaacgccgcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacg 177  Q
    ||||||||| |||||| |||||||| ||||||||||| ||||||  |||| |||||||||||||||    
T  3040127 attagttaagtaacgctgcgcaactcaactcacgctgaaattaaatcttgtgtgagttaactcacg 3040062  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 20419513 - 20419568
Alignment:
Q  131 gcaacttaactcacgctgtaa-ttaacacttgcgtgagttaactcacgcaggaatt 185  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||| ||||||    
T  20419513 gcaacttaactcacgttggaaattaacacttgcgtgagttaactcacgctggaatt 20419568  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 17854734 - 17854694
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcac 176  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  17854734 ttaactcacgctgaaattaacacttgtgtgagttaactcac 17854694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 2190333 - 2190384
Alignment:
Q  132 caacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaa 183  Q
    ||||||||||||||||| ||||||| |||| || ||||||||||||| ||||    
T  2190333 caacttaactcacgctggaattaacgcttgtgtaagttaactcacgctggaa 2190384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 14410776 - 14410733
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgca 179  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||    
T  14410776 ttaactcatgctgaaattaacacgtgcgtgagttaactcacgca 14410733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 18936713 - 18936760
Alignment:
Q  134 acttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 181  Q
    |||||| |||||||| |  |||||||||||||||||||||||||||||    
T  18936713 acttaagtcacgctgcatgtaacacttgcgtgagttaactcacgcagg 18936760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 25994590 - 25994632
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 178  Q
    ||||||||||| | ||||||||| |||||||||||||||||||    
T  25994590 ttaactcacgcagaaattaacacctgcgtgagttaactcacgc 25994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 25994953 - 25994911
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 178  Q
    |||||||||||   |||||||||||||||||||||||||||||    
T  25994953 ttaactcacgcgagaattaacacttgcgtgagttaactcacgc 25994911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 126849 - 126890
Alignment:
Q  137 taactcacgctgtaattaacacttgcgtgagttaactcacgc 178  Q
    |||||||||||| ||||||||| |||||||||||| ||||||    
T  126849 taactcacgctggaattaacacctgcgtgagttaagtcacgc 126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 34328605 - 34328661
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 185  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  34328605 gcgcaatttaactcacgttggaattaacacttgcgtgagttaactcacgctggaatt 34328661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 9384639 - 9384701
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatttacaat 191  Q
    |||||||||||||||| ||| ||||||||||||| | ||||||||||||| |||||| |||||    
T  9384639 gcgcaacttaactcacactgaaattaacacttgccttagttaactcacgctggaattaacaat 9384701  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 23284815 - 23284773
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgc 178  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  23284815 ttaactcacgctggaattaacacctgcgtgagttaactcacgc 23284773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 11561470 - 11561423
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcac 176  Q
    ||||||||||||||||| || ||||||||||| | |||||||||||||    
T  11561470 gcgcaacttaactcacgttgaaattaacactttcctgagttaactcac 11561423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 43466745 - 43466787
Alignment:
Q  133 aacttaactcacgctgtaattaacacttgcgtgagttaactca 175  Q
    |||||||||||||||| |||||| ||||| |||||||||||||    
T  43466745 aacttaactcacgctgaaattaatacttgtgtgagttaactca 43466787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 34328644 - 34328681
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaact 173  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  34328644 ttaactcacgctggaattaacacttgtgtgagttaact 34328681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 9384678 - 9384722
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 180  Q
    ||||||||||||| |||||||| || |||||||||||| ||||||    
T  9384678 ttaactcacgctggaattaacaattacgtgagttaacttacgcag 9384722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 47441693 - 47441665
Alignment:
Q  152 ttaacacttgcgtgagttaactcacgcag 180  Q
    |||||||||||||||||||||||||||||    
T  47441693 ttaacacttgcgtgagttaactcacgcag 47441665  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 9875774 - 9875820
Alignment:
Q  134 acttaactcacgctgtaattaacacttgcgtgagttaactcacgcag 180  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  9875774 acttaactcacgctggaattaacacttgcctgagttaactcacgcag 9875820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 5741602 - 5741523
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactaacgc 127  Q
    |||||||||||||||||| | |||||||||||||  ||||||||  || ||||||||| |||   |||||||||||||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgc 5741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 9863498 - 9863453
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcagg 181  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||    
T  9863498 ttaactgacgctggaattaacacttgtgtgagttaactcacgcagg 9863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 9863568 - 9863519
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 185  Q
    ||||||||| ||| |||||||||||||||||||||| |||||| ||||||    
T  9863568 ttaactcacactggaattaacacttgcgtgagttaaatcacgctggaatt 9863519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 4362512 - 4362453
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaataccc 107  Q
    ||||||||||||||| || | |||||||||||||  |||||||||||||| ||| |||||    
T  4362512 gaattctgctcttcatccagcacttttcgctcgcgccctgcagcgttgcctaaattaccc 4362453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 32879736 - 32879775
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactca 175  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  32879736 ttaactcacgctgaaattaacacatgcgtgagttaactca 32879775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 5741178 - 5741236
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacc 106  Q
    |||||||||||||||||| | |||||| |||||| |||||||||  || ||||||||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcgtcctgcagccatgaccaaaatacc 5741236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 9863607 - 9863551
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactcacgcaggaatt 185  Q
    |||||||||| ||||| ||| ||||||||||||| | ||||||||||| | ||||||    
T  9863607 gcgcaacttacctcacactggaattaacacttgcctaagttaactcacactggaatt 9863551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 26622273 - 26622233
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcac 176  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  26622273 ttaactcgcgctgaaattaacacctgcgtgagttaactcac 26622233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 26728251 - 26728211
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactcac 176  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  26728251 ttaactcgcgctgaaattaacacctgcgtgagttaactcac 26728211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 31271851 - 31271897
Alignment:
Q  129 gcgcaacttaactcacgctgtaattaacacttgcgtgagttaactca 175  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||||    
T  31271851 gcgcaacttaactcacgctggaattaagacttgcatgagttaactca 31271897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 13461269 - 13461231
Alignment:
Q  136 ttaactcacgctgtaattaacacttgcgtgagttaactc 174  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  13461269 ttaactcacgctgaaattaacacgtgcgtgagttaactc 13461231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 21178 - 21135
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagc 91  Q
    |||||||||||||||||| | || ||||||||||||||||||||    
T  21178 gaattctgctcttcacccagcacatttcgctcgcatcctgcagc 21135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 36192 - 36154
Alignment:
Q  137 taactcacgctgtaattaacacttgcgtgagttaactca 175  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  36192 taactcacgctggaattaacacgtgcgtgagttaactca 36154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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