View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_44 (Length: 296)

Name: NF1627_low_44
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_44
NF1627_low_44
[»] chr3 (17 HSPs)
chr3 (18-296)||(34526787-34527065)
chr3 (77-296)||(27617451-27617670)
chr3 (77-296)||(34506236-34506455)
chr3 (139-296)||(27633104-27633261)
chr3 (139-296)||(34517887-34518044)
chr3 (77-151)||(34463227-34463301)
chr3 (18-80)||(27617275-27617337)
chr3 (18-80)||(34478131-34478193)
chr3 (18-80)||(34506060-34506122)
chr3 (30-80)||(34463100-34463150)
chr3 (77-151)||(34478306-34478379)
chr3 (121-172)||(27622785-27622836)
chr3 (30-80)||(34474225-34474275)
chr3 (121-174)||(34508814-34508867)
chr3 (32-80)||(27626388-27626436)
chr3 (81-113)||(27628726-27628758)
chr3 (37-77)||(34517682-34517722)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 34526787 - 34527065
Alignment:
Q  18 aagctttcatcacacacaggacaattctgatataggaacagtgtagcagtcattcagatatcaggacaagtgcactatatcaagctgatacataaattct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526787 aagctttcatcacacacaggacaattctgatataggaacagtgtagcagtcattcagatatcaggacaagtgcactatatcaagctgatacataaattct 34526886  T
Q  118 ctgttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526887 ctgttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaat 34526986  T
Q  218 gaaaccaaatctaacaaaaacccaaagaaatgcttcagtaacaaattctgctaaacataaattatgaaattcaggaggt 296  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  34526987 gaaaccaaatctaacaaaaacccaaagaaatacttcagtaacaagttctgctaaacataaattatgaaattcaggaggt 34527065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 77 - 296
Target Start/End: Original strand, 27617451 - 27617670
Alignment:
Q  77 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatga 176  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||     
T  27617451 atcaggacaagtgcactatatcaagctgacacataaattttcttttcaatttcattagcagctaagcaaggacattcattataacaaattataacaatgt 27617550  T
Q  177 caatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaacccaaagaaatgcttcagtaacaaattctgctaaacata 276  Q
    ||||||||  ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  27617551 caatagtcccgttatcattcaatcaagaaatatcggaaaagaaaaccaaatctaacaaaaacccaaagaaatacttcagtaacaagttctgctaaacata 27617650  T
Q  277 aattatgaaattcaggaggt 296  Q
    |||||| |||||||||||||    
T  27617651 aattataaaattcaggaggt 27617670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 77 - 296
Target Start/End: Original strand, 34506236 - 34506455
Alignment:
Q  77 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaatga 176  Q
    |||||||||||||||||||||||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  34506236 atcaggacaagtgcactatatcaaactgacacagaaattttcttttcaatttcattagcagctaagcaaggacattcattttaacaaattataacaatgt 34506335  T
Q  177 caatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaacccaaagaaatgcttcagtaacaaattctgctaaacata 276  Q
    ||||||||   |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||    
T  34506336 caatagtcccattatcattcaatcaagaaatatcggaaaagaaaaccaaatctaacaaaaacccaaataaatacttcagtaacaagttctgctaaacata 34506435  T
Q  277 aattatgaaattcaggaggt 296  Q
    |||||| ||| |||||||||    
T  34506436 aattataaaactcaggaggt 34506455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 27633104 - 27633261
Alignment:
Q  139 taagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaac 238  Q
    |||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27633104 taagcaaggacattcatttttacagattataacaatgtcaataatccagttatcattcaatcaagaaatatcggaatatgaaaccaaatctaacaaaaac 27633203  T
Q  239 ccaaagaaatgcttcagtaacaaattctgctaaacataaattatgaaattcaggaggt 296  Q
     ||||||||| |||||| || || ||||||||||||||| |||| |||||||||||||    
T  27633204 tcaaagaaatacttcagaaataagttctgctaaacataagttataaaattcaggaggt 27633261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 139 - 296
Target Start/End: Original strand, 34517887 - 34518044
Alignment:
Q  139 taagcaaggacattcatttttacaaattataacaatgacaatagtctagttatcattcaatcatgaaatatcggaaaatgaaaccaaatctaacaaaaac 238  Q
    |||||||||||||||||||||||| |||||||||||  ||||| || |||||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  34517887 taagcaaggacattcatttttacagattataacaatatcaataatccagttatcattcaatcaagaaatatcggaatatgaaaccaaatccaacaaaaac 34517986  T
Q  239 ccaaagaaatgcttcagtaacaaattctgctaaacataaattatgaaattcaggaggt 296  Q
     ||||||||| |||||| || || ||||||||||||||| |||| |||||||||||||    
T  34517987 tcaaagaaatacttcagaaataagttctgctaaacataagttataaaattcaggaggt 34518044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 34463227 - 34463301
Alignment:
Q  77 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacat 151  Q
    |||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||| |||||||||||||    
T  34463227 atcaggacaagtgcactacatcaagctgatacagaaattttatgttcaatttcattagcaggtaagcaaggacat 34463301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 27617275 - 27617337
Alignment:
Q  18 aagctttcatcacacacaggacaattctgatataggaacagtgtagcagtcattcagatatca 80  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| |||||  |||||||    
T  27617275 aagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgatatca 27617337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34478131 - 34478193
Alignment:
Q  18 aagctttcatcacacacaggacaattctgatataggaacagtgtagcagtcattcagatatca 80  Q
    |||||||||||||||| ||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  34478131 aagctttcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatatca 34478193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 34506060 - 34506122
Alignment:
Q  18 aagctttcatcacacacaggacaattctgatataggaacagtgtagcagtcattcagatatca 80  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| |||||  |||||||    
T  34506060 aagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgatatca 34506122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 34463100 - 34463150
Alignment:
Q  30 cacacaggacaattctgatataggaacagtgtagcagtcattcagatatca 80  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  34463100 cacacaggacaaatctgatatatgaacagtgaagcagtcattcagatatca 34463150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 34478306 - 34478379
Alignment:
Q  77 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacat 151  Q
    ||||||||| |||||||||||||||||| || ||||| | | |||||||||||||||| |||||||||| |||||    
T  34478306 atcaggaca-gtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaaagacat 34478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 27622785 - 27622836
Alignment:
Q  121 ttcaatttcattagcagctaagcaaggacattcatttttacaaattataaca 172  Q
    ||||||||||||| ||||||||||||||| |||| ||||| |||||||||||    
T  27622785 ttcaatttcattaacagctaagcaaggacgttcaattttataaattataaca 27622836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 34474225 - 34474275
Alignment:
Q  30 cacacaggacaattctgatataggaacagtgtagcagtcattcagatatca 80  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||||||    
T  34474225 cacacaggataaatctgatataggagcagtgaagcagtcattcagatatca 34474275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 34508814 - 34508867
Alignment:
Q  121 ttcaatttcattagcagctaagcaaggacattcatttttacaaattataacaat 174  Q
    ||||||||||||| ||||||||||||||  |||| ||||| |||||||||||||    
T  34508814 ttcaatttcattaacagctaagcaaggaggttcaattttataaattataacaat 34508867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 27626388 - 27626436
Alignment:
Q  32 cacaggacaattctgatataggaacagtgtagcagtcattcagatatca 80  Q
    |||||||||  ||||||||||| ||| ||||||||||||||| ||||||    
T  27626388 cacaggacatatctgatatagggacattgtagcagtcattcaaatatca 27626436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 27628726 - 27628758
Alignment:
Q  81 ggacaagtgcactatatcaagctgatacataaa 113  Q
    ||||| |||||||||||||||||||||||||||    
T  27628726 ggacatgtgcactatatcaagctgatacataaa 27628758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 34517682 - 34517722
Alignment:
Q  37 gacaattctgatataggaacagtgtagcagtcattcagata 77  Q
    ||||| |||||||||||||||||| |||||||| |||||||    
T  34517682 gacaaatctgatataggaacagtgaagcagtcactcagata 34517722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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