View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_46 (Length: 284)
Name: NF1627_low_46
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 3603089 - 3602832
Alignment:
| Q |
18 |
aaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacgatactgaggattattacaatgaaagttgcagtatatatta |
117 |
Q |
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| T |
3603089 |
aaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacggtactgaggattattacaatgaaagttgcagtatatatta |
3602990 |
T |
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| Q |
118 |
tgctgaaatatgtaaaaatggtgctgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaatatgaaattccatgattacaagccata |
217 |
Q |
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| T |
3602989 |
tgctgaaatatgtaaaaatggtgttgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaacatgaaattccatgattacaagccata |
3602890 |
T |
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| Q |
218 |
tttttattatattgtgggtaagtaattaatgctaacactattatagatttatattctt |
275 |
Q |
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| T |
3602889 |
tttttattatattgtgggtaggttcctaatgctaacattaatatagttttatattctt |
3602832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 14341889 - 14341638
Alignment:
| Q |
18 |
aaaaatttaccattgctgtccttgtattagttctccttgttatggcaattactatcgacgatactgaggattattacaatgaaagttgcagtatatatta |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14341889 |
aaaaatttaccattgcttcccttgtattagttctccttgttatggcaattactatcgacggtactgaggattattacaatgaaagttgcagtatatatta |
14341790 |
T |
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| Q |
118 |
tgctgaaatatgtaaaaatggtgctgtttgtgcggaagctccttggctttgtatttgttgtgattttcaaaaatatgaaattccatgattacaagccata |
217 |
Q |
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||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14341789 |
tgctgaaatatgtaaaaatcgtgctatttgtttggaagctccttggctttgtatttgttgtgattttcaaaaacatgaaattccatgattacaagccata |
14341690 |
T |
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| Q |
218 |
tttttattatattgtgggtaagtaattaatgctaacactattatagatttatattc |
273 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
14341689 |
tttttattatattgtgggtaag----taatgctaacattattatagatttatattc |
14341638 |
T |
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