View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_47 (Length: 274)
Name: NF1627_low_47
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 32263901 - 32264144
Alignment:
| Q |
18 |
atgattagtaactcaactaactnnnnnnntgaatttaagtggagcaatcctcccaattagtggttgtggataatattatttgtcaaatgagtgatgtctc |
117 |
Q |
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| T |
32263901 |
atgatcagtaactcaactaactaaaaaaatgaatttaagtggagcaatcctcccaattagtggttgtggataatattatttgtcaaatgagtgatgtctc |
32264000 |
T |
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| Q |
118 |
catttacgaatattattcatgtcatctatcttaatttccaaactctttaaataaatttgttcatcggcaaggtattaatgtagctgctcattggctcttt |
217 |
Q |
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| T |
32264001 |
catttacgaatattattcatgtcatctatcttaatttccaaactctttagataaatgtgttcatcggcaagg---taatgtagttgctcattggctcttt |
32264097 |
T |
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| Q |
218 |
tataaagaaaattgtattgatgacgagtaaaaatcagcgtagaatta |
264 |
Q |
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| T |
32264098 |
tataaacaaaattgtattgatgacgagtaaaaatcagcgtagaatta |
32264144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 32277232 - 32277418
Alignment:
| Q |
51 |
tttaagtggagcaatcctcccaattagtggttgtggataatattatttgtcaaatgagtgatgtctccatttacgaatattattcatgtcatctatctta |
150 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||| |
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| T |
32277232 |
tttaagtggagtaatcctcccaattagtggttgtggataatattatttgtcaaatgacttatgtttccatttacgaatattattcaaatcatctatctta |
32277331 |
T |
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| Q |
151 |
atttccaaactctttaaataaatttgttcatcggcaaggtattaatgtagctgctcattggctcttttataaagaaaattgtattgatga |
240 |
Q |
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| T |
32277332 |
atttccaaactatttaggtaaatttgttcaccggtaag---tcaatgtagttgctcatttgctcttttataaagaaaattttatcgatga |
32277418 |
T |
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