View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_48 (Length: 272)
Name: NF1627_low_48
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 35113384 - 35113128
Alignment:
| Q |
14 |
gttcttgcattcaatatgtggtttttaggttccctcattccactttaatttgaatttttatgcagatcaacaacttttataatctatggttttttgatat |
113 |
Q |
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| T |
35113384 |
gttcttgcattcaatatgtggtttttaggttccctccttccactttaatttgaatttttatgcagatcaacaacttttataatctatggtttt--gatat |
35113287 |
T |
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| Q |
114 |
cttgctttttaaaatgacatctctaacttcgataattttctgttgtctatcaattttataaagtgtgtgtttgctgattgataaaaattaatctgtaaaa |
213 |
Q |
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| T |
35113286 |
cttgctttttaaaatgacatctctaactttgataattttctgttgtctatcaattttataaagtgtgtgtttgctgattgataaaaattaatctgtaaaa |
35113187 |
T |
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| Q |
214 |
caatgtaaggggacaaaagctaatcctacttataactctttaatagggtgtcaattttc |
272 |
Q |
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| T |
35113186 |
caatgtaaggggacaaaagataatcctacttataactctttaatagggtgtcaattttc |
35113128 |
T |
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