View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_50 (Length: 267)
Name: NF1627_low_50
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 44515509 - 44515664
Alignment:
| Q |
1 |
acggttggagggaatgtgtaaaacgagtgaaggtaatatacacatt---------gaggatgtggttggtggctttacttgtgaggaagtacttcgtact |
91 |
Q |
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| T |
44515509 |
acggttggagggaatgtgtaaaatgagtgaaggtaatatacacattgagtgcattgaggatgtggttggtggctttacttgcgaggaagtacttcgtact |
44515608 |
T |
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| Q |
92 |
ataagagataatggcattccgactgaaaaggccttcaaatatactggactacctgt |
147 |
Q |
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| T |
44515609 |
ataagagatagtggcattccgactgaaaaggccttcaaatatactggactacctgt |
44515664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 44515377 - 44515283
Alignment:
| Q |
157 |
tggtcatgagcaacaatagcaagctagaacaggtttaattcaaccaaacaccaagtctagtaaataacatatatgtatcattctataataataac |
251 |
Q |
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| T |
44515377 |
tggtcataagcaacaatagcaagctagaacaggtttaattcaactaaacaccaagtctagtaaataacatacatgcatcattctataataataac |
44515283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 44509761 - 44509702
Alignment:
| Q |
192 |
taattcaaccaaacaccaagtctagtaaataacatatatgtatcattctataataataac |
251 |
Q |
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| T |
44509761 |
taattcaactaaacaccaagtctagtaaataacatatatgtatcattctataataataac |
44509702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 26505465 - 26505407
Alignment:
| Q |
192 |
taattcaaccaaacaccaagtctagtaaataacatatatgtatcattctataataataa |
250 |
Q |
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| T |
26505465 |
taattcaactaaacaccaaatctagtaaataatatatatgtaactttctataataataa |
26505407 |
T |
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