View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_51 (Length: 266)

Name: NF1627_low_51
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_51
NF1627_low_51
[»] chr3 (3 HSPs)
chr3 (115-210)||(45004358-45004453)
chr3 (195-255)||(45004002-45004062)
chr3 (46-91)||(25227395-25227440)
[»] chr4 (6 HSPs)
chr4 (16-106)||(43634265-43634355)
chr4 (196-255)||(43634453-43634512)
chr4 (115-166)||(43634402-43634452)
chr4 (48-108)||(32310396-32310456)
chr4 (48-109)||(25146874-25146935)
chr4 (48-89)||(26973307-26973348)
[»] chr6 (3 HSPs)
chr6 (48-128)||(5741522-5741602)
chr6 (48-107)||(4362453-4362512)
chr6 (48-106)||(5741178-5741236)
[»] scaffold0051 (1 HSPs)
scaffold0051 (48-91)||(21135-21178)
[»] chr7 (1 HSPs)
chr7 (77-128)||(20188265-20188316)
[»] chr2 (3 HSPs)
chr2 (54-109)||(28030432-28030487)
chr2 (56-122)||(5289776-5289842)
chr2 (48-128)||(42882455-42882535)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 45004453 - 45004358
Alignment:
Q  115 agttaactcacgcaggaatttacaatagaatttccgcggaaatatttttccatttgaattcacgcagtgatttctaattccaaattccagtttctt 210  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  45004453 agttaactcacgcaggaatttacaatagaatttctgcataaatatttttccatttgaattcacgcagtgattactgattccaaattccagtttctt 45004358  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 45004062 - 45004002
Alignment:
Q  195 caaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 255  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  45004062 caaaatccagtttcttattgttatccttttattccaatttagttgcttcctctttattcat 45004002  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 25227440 - 25227395
Alignment:
Q  46 tcgaattctgctcttcacccggtacttttcgctcgcatcctgcagc 91  Q
    |||||||||||||||| ||| | ||||||||||||| |||||||||    
T  25227440 tcgaattctgctcttccccctgcacttttcgctcgcgtcctgcagc 25227395  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 43634265 - 43634355
Alignment:
Q  16 cacatctaacatccttcgatctctatttcttcgaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacc 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||| |||||||| ||||||||||    
T  43634265 cacatctaacatccttcgatctctatttcttcgaattctactcttcacccagtactttttgctcgcaccctacagcgttgtccaaaatacc 43634355  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 43634453 - 43634512
Alignment:
Q  196 aaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43634453 aaattccagtttcttatcgttatccttttattccaatttagttgcttcccctttattcat 43634512  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 43634402 - 43634452
Alignment:
Q  115 agttaactcacgcaggaatttacaatagaatttccgcggaaatatttttcca 166  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  43634402 agttaactcacgcaggaatttacaatagaatttctgc-aaaatatttttcca 43634452  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 32310456 - 32310396
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccc 108  Q
    |||||||||||||||||| |||||||||||||||  |||||| |||| || ||| ||||||    
T  32310456 gaattctgctcttcacccagtacttttcgctcgcgccctgcaccgttacctaaattacccc 32310396  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 25146874 - 25146935
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccct 109  Q
    |||| |||||||||||||   |||||||||||||  |||||||||||||| ||| |||||||    
T  25146874 gaatgctgctcttcacccaacacttttcgctcgcgccctgcagcgttgcctaaattacccct 25146935  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 26973307 - 26973348
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgca 89  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  26973307 gaattttgctcttcaccctgcacttttcgctcgcatcctgca 26973348  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 5741602 - 5741522
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactcacgca 128  Q
    |||||||||||||||||| | |||||||||||||  ||||||||  || ||||||||| |||   |||||||||| |||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgccctgcagccatgaccaaaatacacctgcgttagttaactaacgca 5741522  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 4362512 - 4362453
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaataccc 107  Q
    ||||||||||||||| || | |||||||||||||  |||||||||||||| ||| |||||    
T  4362512 gaattctgctcttcatccagcacttttcgctcgcgccctgcagcgttgcctaaattaccc 4362453  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 5741178 - 5741236
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacc 106  Q
    |||||||||||||||||| | |||||| |||||| |||||||||  || ||||||||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcgtcctgcagccatgaccaaaatacc 5741236  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 21178 - 21135
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagc 91  Q
    |||||||||||||||||| | || ||||||||||||||||||||    
T  21178 gaattctgctcttcacccagcacatttcgctcgcatcctgcagc 21135  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 20188265 - 20188316
Alignment:
Q  77 ctcgcatcctgcagcgttgcccaaaatacccctatattagttaactcacgca 128  Q
    ||||| ||||||||||||||||||||| |||||   ||||||||||||||||    
T  20188265 ctcgcgtcctgcagcgttgcccaaaatgcccctgcgttagttaactcacgca 20188316  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 28030432 - 28030487
Alignment:
Q  54 tgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccct 109  Q
    |||||||||||| | |||||||||||||  |||||||||||||| ||| |||||||    
T  28030432 tgctcttcacccagcacttttcgctcgcgccctgcagcgttgcctaaattacccct 28030487  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 5289776 - 5289842
Alignment:
Q  56 ctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaact 122  Q
    |||||||||| | || |||||||||||||||||| |  ||||||||||||||||   ||||||||||    
T  5289776 ctcttcacccagcacatttcgctcgcatcctgcaaccatgcccaaaatacccctgcgttagttaact 5289842  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 42882455 - 42882535
Alignment:
Q  48 gaattctgctcttcacccggtacttttcgctcgcatcctgcagcgttgcccaaaatacccctatattagttaactcacgca 128  Q
    |||||||||||||||||| | ||||||||||| |  ||||||||  || | ||||||||||||   ||||||||| |||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgccctgcagccatgactaaaatacccctacgctagttaactaacgca 42882535  T

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