View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_53 (Length: 264)

Name: NF1627_low_53
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_53
NF1627_low_53
[»] chr1 (18 HSPs)
chr1 (160-250)||(52133275-52133365)
chr1 (50-110)||(27564651-27564711)
chr1 (50-108)||(48716200-48716258)
chr1 (50-107)||(37649322-37649379)
chr1 (66-118)||(26274569-26274621)
chr1 (50-110)||(38595278-38595338)
chr1 (50-108)||(3000443-3000501)
chr1 (50-108)||(41758929-41758987)
chr1 (50-110)||(2582039-2582099)
chr1 (56-108)||(47452238-47452290)
chr1 (50-109)||(9474793-9474852)
chr1 (50-110)||(43256-43316)
chr1 (50-94)||(38632253-38632297)
chr1 (57-104)||(32813378-32813425)
chr1 (202-241)||(52145172-52145211)
chr1 (50-78)||(5958948-5958976)
chr1 (50-78)||(50590948-50590976)
chr1 (56-104)||(51898605-51898653)
[»] chr4 (14 HSPs)
chr4 (50-110)||(41236471-41236531)
chr4 (51-111)||(24995022-24995082)
chr4 (50-109)||(42044284-42044343)
chr4 (51-108)||(48182967-48183024)
chr4 (50-108)||(6034168-6034226)
chr4 (51-111)||(11511378-11511437)
chr4 (50-106)||(54473453-54473509)
chr4 (50-109)||(23608359-23608418)
chr4 (61-108)||(53352492-53352539)
chr4 (56-104)||(29240016-29240064)
chr4 (50-104)||(19670638-19670692)
chr4 (50-104)||(29547881-29547935)
chr4 (50-104)||(55475315-55475369)
chr4 (56-104)||(50526093-50526141)
[»] chr7 (17 HSPs)
chr7 (50-109)||(19329966-19330025)
chr7 (56-110)||(8080299-8080353)
chr7 (50-110)||(32951409-32951469)
chr7 (50-113)||(3434676-3434739)
chr7 (50-109)||(7389513-7389571)
chr7 (50-109)||(36362138-36362197)
chr7 (50-109)||(38837341-38837400)
chr7 (50-110)||(4999430-4999490)
chr7 (50-110)||(36361841-36361901)
chr7 (50-109)||(40957831-40957890)
chr7 (50-110)||(11044302-11044362)
chr7 (57-104)||(46374746-46374793)
chr7 (50-104)||(38044321-38044375)
chr7 (50-99)||(19436114-19436163)
chr7 (63-104)||(39255846-39255887)
chr7 (50-78)||(8238337-8238365)
chr7 (50-114)||(35137657-35137721)
[»] chr2 (19 HSPs)
chr2 (50-108)||(30915587-30915645)
chr2 (50-114)||(17473144-17473208)
chr2 (50-110)||(28381571-28381631)
chr2 (50-109)||(7465652-7465711)
chr2 (50-117)||(10249291-10249358)
chr2 (50-116)||(28863579-28863646)
chr2 (50-108)||(5574418-5574476)
chr2 (50-108)||(13438467-13438525)
chr2 (50-111)||(27864815-27864876)
chr2 (50-110)||(4060809-4060869)
chr2 (50-110)||(40701602-40701662)
chr2 (50-109)||(19930737-19930796)
chr2 (50-108)||(38882729-38882787)
chr2 (51-108)||(32505566-32505623)
chr2 (56-104)||(20700945-20700993)
chr2 (50-117)||(9058604-9058671)
chr2 (57-104)||(40613824-40613871)
chr2 (52-104)||(17823914-17823966)
chr2 (50-106)||(33436020-33436076)
[»] scaffold0237 (1 HSPs)
scaffold0237 (50-109)||(4153-4212)
[»] chr8 (16 HSPs)
chr8 (50-109)||(14548046-14548105)
chr8 (50-108)||(504039-504097)
chr8 (50-108)||(23122515-23122573)
chr8 (57-109)||(42710211-42710263)
chr8 (50-109)||(34012213-34012272)
chr8 (50-108)||(9122309-9122367)
chr8 (50-108)||(12831171-12831229)
chr8 (50-104)||(40423865-40423919)
chr8 (57-104)||(43414503-43414550)
chr8 (50-108)||(1179858-1179916)
chr8 (56-108)||(15197463-15197515)
chr8 (50-105)||(24307714-24307769)
chr8 (50-104)||(16056323-16056377)
chr8 (50-104)||(32707925-32707979)
chr8 (50-108)||(44507006-44507063)
chr8 (56-104)||(37038609-37038657)
[»] chr6 (9 HSPs)
chr6 (50-109)||(11427742-11427801)
chr6 (50-109)||(17598678-17598737)
chr6 (50-109)||(22880575-22880634)
chr6 (50-109)||(29857951-29858010)
chr6 (50-109)||(32869802-32869861)
chr6 (50-110)||(23128042-23128103)
chr6 (50-105)||(15832701-15832756)
chr6 (57-104)||(31110683-31110730)
chr6 (50-104)||(4231672-4231726)
[»] chr5 (11 HSPs)
chr5 (50-109)||(2740398-2740457)
chr5 (50-108)||(14831938-14831996)
chr5 (50-108)||(35785323-35785381)
chr5 (50-114)||(18520796-18520860)
chr5 (50-109)||(33149555-33149614)
chr5 (50-108)||(31132458-31132516)
chr5 (61-109)||(40145542-40145590)
chr5 (62-109)||(16115249-16115296)
chr5 (50-96)||(36732872-36732918)
chr5 (56-104)||(31009118-31009166)
chr5 (56-104)||(35943814-35943862)
[»] chr3 (16 HSPs)
chr3 (50-109)||(33644324-33644383)
chr3 (50-108)||(53982135-53982193)
chr3 (50-118)||(11095275-11095343)
chr3 (50-114)||(31456813-31456877)
chr3 (50-109)||(48587018-48587077)
chr3 (50-109)||(52629424-52629483)
chr3 (50-109)||(54868812-54868871)
chr3 (62-108)||(49607550-49607596)
chr3 (56-104)||(33118772-33118820)
chr3 (57-104)||(11347844-11347891)
chr3 (57-104)||(26141452-26141499)
chr3 (52-107)||(27714822-27714877)
chr3 (54-104)||(30801655-30801705)
chr3 (50-107)||(36707347-36707404)
chr3 (50-106)||(9563123-9563179)
chr3 (50-78)||(36331277-36331305)
[»] scaffold0150 (1 HSPs)
scaffold0150 (202-250)||(8527-8575)
[»] scaffold0321 (1 HSPs)
scaffold0321 (50-109)||(10026-10085)
[»] scaffold1268 (1 HSPs)
scaffold1268 (56-104)||(851-899)
[»] scaffold1267 (1 HSPs)
scaffold1267 (56-104)||(851-899)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 52133275 - 52133365
Alignment:
Q  160 atgacctatttaacaaatataaatagaaaataatgatatactttacctcatccattcccatctcaacaaccttttcctgcaatgcaccaac 250  Q
    ||||| |||||||||||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52133275 atgacatatttaacaaatataaatatcaaataacaatatactttacctcatccattcccatctcaacaaccttttcctgcaacgcaccaac 52133365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 27564711 - 27564651
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27564711 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcta 27564651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 48716258 - 48716200
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  48716258 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 48716200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 37649322 - 37649379
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattact 107  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  37649322 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattact 37649379  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 26274569 - 26274621
Alignment:
Q  66 acaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaataaa 118  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  26274569 acaagggtgtatgggaataaagggtgtctatgtatcattactctaaaaataaa 26274621  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 38595278 - 38595338
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    |||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||    
T  38595278 ctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcattactcta 38595338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 3000443 - 3000501
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  3000443 ctaatatatggggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 3000501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 41758929 - 41758987
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  41758929 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 41758987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 2582039 - 2582099
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    |||||||||| |||||||||||||||||   |||||||| ||| |||||||||||||||||    
T  2582039 ctaatacatgaggtgtacaagggtgtattagaataaagggtgtttatgtatcattactcta 2582099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 47452290 - 47452238
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||||||||||||||| ||||||| |||||||  |||||||||||||||||||    
T  47452290 catggggtgtacaaggatgtatgggaataaagagtgtctatgtatcattactc 47452238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 9474852 - 9474793
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||| ||||||||||||||||  |||||||  ||||||||||||||||||||    
T  9474852 ctaatgcatgggatgtacaagggtgtatgagaataaagagtgtctatgtatcattactct 9474793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 43256 - 43316
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| ||||||||||||||| ||||||   |||||||| | |||||||||||||||||||    
T  43256 ctaatgcatggggtgtacaagagtgtataagaataaagggtatctatgtatcattactcta 43316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 38632297 - 38632253
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtct 94  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||    
T  38632297 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtct 38632253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 32813378 - 32813425
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||||||||||| |||||| | |||||||||| ||||    
T  32813378 atggggtgtacaagggtgtatgggaataaatggtgtctatgtaacatt 32813425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 52145172 - 52145211
Alignment:
Q  202 ttacctcatccattcccatctcaacaaccttttcctgcaa 241  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  52145172 ttacctcatctattcccatctcaacaaccttttcttgcaa 52145211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 5958976 - 5958948
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatg 78  Q
    |||||||||||||||||||||||||||||    
T  5958976 ctaatacatggggtgtacaagggtgtatg 5958948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 50590976 - 50590948
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatg 78  Q
    |||||||||||||||||||||||||||||    
T  50590976 ctaatacatggggtgtacaagggtgtatg 50590948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 51898653 - 51898605
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||| | |||||||| ||| |||||| ||||    
T  51898653 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatt 51898605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 41236471 - 41236531
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  41236471 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcta 41236531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 24995082 - 24995022
Alignment:
Q  51 taatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaa 111  Q
    |||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  24995082 taatgcatggggtgtacaatggtgtatgggaataaagggtgtctatgtatcattactctaa 24995022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 42044343 - 42044284
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42044343 ctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcattactct 42044284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 48183024 - 48182967
Alignment:
Q  51 taatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  48183024 taatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 48182967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 6034168 - 6034226
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||  |||||| | |||||||||||||||||||    
T  6034168 ctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcattactc 6034226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 11511437 - 11511378
Alignment:
Q  51 taatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaa 111  Q
    |||| |||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  11511437 taatgcatgaggtgtacaagggtgtatggaaataaatg-tgtctatgtatcattactctaa 11511378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 54473509 - 54473453
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattac 106  Q
    ||||||||||| |||||||||||||||||| |||||||| |||  ||||||||||||    
T  54473509 ctaatacatggagtgtacaagggtgtatgggaataaagggtgttcatgtatcattac 54473453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 23608359 - 23608418
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||| |||||||| || ||||||| |||||||| ||||||||||||||||||||    
T  23608359 ctaatgcatgaggtgtacagggatgtatgggaataaaggatgtctatgtatcattactct 23608418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 53352539 - 53352492
Alignment:
Q  61 ggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  53352539 ggtgtacaagggtgtatgaaaataaagggtgtctatgtatcattactc 53352492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 29240016 - 29240064
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||| |||||||| |||||||| |||||||||| ||||    
T  29240016 catggggtgtacaagagtgtatgggaataaagggtgtctatgtaacatt 29240064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 19670692 - 19670638
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  19670692 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 19670638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 29547935 - 29547881
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  29547935 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 29547881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 55475315 - 55475369
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  55475315 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 55475369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 50526141 - 50526093
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||| | |||||||| ||| |||||| ||||    
T  50526141 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatt 50526093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 19329966 - 19330025
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  19329966 ctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactct 19330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 8080353 - 8080299
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  8080353 catggggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcta 8080299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 32951469 - 32951409
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||||    
T  32951469 ctaatacatggggtgtacaagggtgtatgagaataaggggtgtctatgtatcattactcta 32951409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 3434676 - 3434739
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaa 113  Q
    ||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||    
T  3434676 ctaatgcatggggtgtacaaggctgtatgggaataaagggtgtctatgtatcattactcaaaaa 3434739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 7389513 - 7389571
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  7389513 ctaatacatggggtgtaca-gggtgtatgggaataaaggatgtctatgtatcattactct 7389571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 36362138 - 36362197
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    |||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||    
T  36362138 ctaatacatgggatgtacaagggtgtatgagaataaagggtgtctatgtatcattactct 36362197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 38837341 - 38837400
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  38837341 ctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcattactct 38837400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 4999490 - 4999430
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| |||||||||||||||||||||||  |||||| | |||||||||||||||||||||    
T  4999490 ctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcattactcta 4999430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 36361901 - 36361841
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    |||||||||||  ||||||||||||||||  |||||||| |||||||||||||||||||||    
T  36361901 ctaatacatggaatgtacaagggtgtatgagaataaagggtgtctatgtatcattactcta 36361841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 40957831 - 40957890
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||||||||||  ||||| || ||||||||||||||||||||    
T  40957831 ctaatgcatggggtgtacaagggtgtatgaaaataatgggtgtctatgtatcattactct 40957890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 11044302 - 11044362
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| |||| ||||||||| ||||||||  |||||||  |||||||||||||||||||||    
T  11044302 ctaatgcatgaggtgtacaaaggtgtatgaaaataaagagtgtctatgtatcattactcta 11044362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 46374793 - 46374746
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||||||||||| |||||| | |||||||||| ||||    
T  46374793 atggggtgtacaagggtgtatgggaataaatggtgtctatgtaacatt 46374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 38044321 - 38044375
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  38044321 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 38044375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 19436163 - 19436114
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgta 99  Q
    ||||| |||||||||||||||||||||||  |||||| | ||||||||||    
T  19436163 ctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgta 19436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 39255887 - 39255846
Alignment:
Q  63 tgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||| ||||||||| |||||||||| ||||    
T  39255887 tgtacaagggtgtatgataataaagggtgtctatgtaacatt 39255846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 8238337 - 8238365
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatg 78  Q
    |||||||||||||||||||||||||||||    
T  8238337 ctaatacatggggtgtacaagggtgtatg 8238365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 35137657 - 35137721
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaa 114  Q
    ||||| |||||| ||||||||||||||||  || ||| | | |||||| ||||||||||||||||    
T  35137657 ctaatgcatgggatgtacaagggtgtatgagaacaaatggtatctatggatcattactctaaaaa 35137721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 30915587 - 30915645
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  30915587 ctaatacatggggtgtacaagggtgtatggaaataatggatgtctatgtatcattactc 30915645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 17473144 - 17473208
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaa 114  Q
    ||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  17473144 ctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcaaaaaa 17473208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 28381631 - 28381571
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    |||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  28381631 ctaatatatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactcta 28381571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 7465711 - 7465652
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7465711 ctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactct 7465652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 10249358 - 10249291
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaataa 117  Q
    ||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||| || |||||    
T  10249358 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactccaataataa 10249291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 28863579 - 28863646
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc-taaaaata 116  Q
    ||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  28863579 ctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcattactcataaaaata 28863646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 5574476 - 5574418
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||    
T  5574476 ctaatgcatggcgtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 5574418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 13438467 - 13438525
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  13438467 ctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 13438525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 27864815 - 27864876
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaa 111  Q
    |||||||||||| ||||||||||||||||  |||||||| |||| |||||||||||||||||    
T  27864815 ctaatacatgggatgtacaagggtgtatgagaataaagggtgtcaatgtatcattactctaa 27864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 4060809 - 4060869
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| |||||||||||||||||||||||| |||||| | ||| |||||||||||||||||    
T  4060809 ctaatgcatggggtgtacaagggtgtatggaaataaaagatgtttatgtatcattactcta 4060869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 40701602 - 40701662
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactcta 110  Q
    ||||| ||| |||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  40701602 ctaatgcatcgggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactcta 40701662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 19930796 - 19930737
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||| ||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  19930796 ctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattactct 19930737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 38882787 - 38882729
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||| |||||| | | |||||||||||||||||    
T  38882787 ctaatgcatggggtgtacaagggtgtatgggaataaatggtctctatgtatcattactc 38882729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 32505623 - 32505566
Alignment:
Q  51 taatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||| |||||||||||||||||||||||  |||||||  |||||||||||||||||||    
T  32505623 taatgcatggggtgtacaagggtgtatgagaataaagagtgtctatgtatcattactc 32505566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 20700945 - 20700993
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  20700945 catggggtgtacaagggtgtatgggaataaagggtgtctatgtaacatt 20700993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 9058604 - 9058671
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaataa 117  Q
    ||||| ||||||||||||||| |||||||| |||||||| | | ||| ||||||||||| ||||||||    
T  9058604 ctaatgcatggggtgtacaagagtgtatgggaataaagggtatttatatatcattactcgaaaaataa 9058671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 40613871 - 40613824
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  40613871 atggggtgtacaagggtgtatgggaataaagggtgtctatgtaacatt 40613824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 17823914 - 17823966
Alignment:
Q  52 aatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||| ||||||||||||||||||||||  |||||||| |||||||||| ||||    
T  17823914 aatatatggggtgtacaagggtgtatgtaaataaaggatgtctatgtaacatt 17823966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 33436076 - 33436020
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattac 106  Q
    ||||| |||| ||||||||||||||||||  |||||| | |||||||| ||||||||    
T  33436076 ctaatgcatgaggtgtacaagggtgtatgagaataaaaggtgtctatgcatcattac 33436020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 4153 - 4212
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  4153 ctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcattactct 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 14548046 - 14548105
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  14548046 ctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactct 14548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 504097 - 504039
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  504097 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 504039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 23122573 - 23122515
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  23122573 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactc 23122515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 42710263 - 42710211
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  42710263 atggggtgtacaagggtgtatgggaataaagggtgtctgtgtatcattactct 42710211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 34012272 - 34012213
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| ||||||||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  34012272 ctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcattactct 34012213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 9122309 - 9122367
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| ||||||||||||||| |||||||| |||||||  |||||||||||||||||||    
T  9122309 ctaatgcatggggtgtacaagagtgtatgggaataaagaatgtctatgtatcattactc 9122367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 12831171 - 12831229
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||  |||||| | |||||||||||||||||||    
T  12831171 ctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcattactc 12831229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 40423919 - 40423865
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||| ||||||||||||||||||| |||||| | |||||||||||||||    
T  40423919 ctaatacatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 40423865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 43414550 - 43414503
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  43414550 atggggtgtacaagggtgtatggcaataaagggtgtctatgtaacatt 43414503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 1179916 - 1179858
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||| | ||||| |||||||| ||||||| |||||||||||    
T  1179916 ctaatgcatggggtgtacaaggatatatgggaataaaggatgtctatctatcattactc 1179858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15197463 - 15197515
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||| ||||||||||||||||||| ||||||   |||||||||||||||||||    
T  15197463 catgaggtgtacaagggtgtatgggaataaaaagtgtctatgtatcattactc 15197515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 24307769 - 24307714
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatta 105  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| |||||    
T  24307769 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatta 24307714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 16056377 - 16056323
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  16056377 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 16056323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 32707979 - 32707925
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  32707979 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 32707925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 44507063 - 44507006
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||  ||||||   |||||||||||||||||||    
T  44507063 ctaatgcatggggtgtacaagggtgtatgagaataaa-tatgtctatgtatcattactc 44507006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 37038609 - 37038657
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||| | |||||||| ||| |||||| ||||    
T  37038609 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatt 37038657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 11427742 - 11427801
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  11427742 ctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactct 11427801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 17598678 - 17598737
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  17598678 ctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactct 17598737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 22880634 - 22880575
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    |||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||    
T  22880634 ctaatacatggggtgtacaagggtgtatgggaataaatggtgtatatgtatcattactct 22880575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 29857951 - 29858010
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  29857951 ctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcattactct 29858010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 32869802 - 32869861
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  32869802 ctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactct 32869861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 23128103 - 23128042
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaat-aaaggttgtctatgtatcattactcta 110  Q
    ||||| |||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  23128103 ctaatgcatgggatgtacaagggtgtatggaaataaaaggttctctatgtatcattactcta 23128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 15832701 - 15832756
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatta 105  Q
    ||||| |||||||||||||||||||||| | |||||||| |||||| |||||||||    
T  15832701 ctaatgcatggggtgtacaagggtgtattggaataaagggtgtctacgtatcatta 15832756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 31110730 - 31110683
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  31110730 atggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacatt 31110683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 4231672 - 4231726
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||||||  | |||| | |||||||||| ||||    
T  4231672 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 4231726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 2740398 - 2740457
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2740398 ctaatgcatgggatgtacaagggtgtatgggaataaagggtgtctatgtatcattactct 2740457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 14831938 - 14831996
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  14831938 ctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcattactc 14831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 35785323 - 35785381
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  35785323 ctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactc 35785381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 18520860 - 18520796
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaa 114  Q
    ||||| |||| ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||    
T  18520860 ctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtctatgtatcattactcttaaaa 18520796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 33149614 - 33149555
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| ||||||||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  33149614 ctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcattactct 33149555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 31132458 - 31132516
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||| ||||||||||||||||||  |||||||| ||| |||||||||||||||    
T  31132458 ctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtttatgtatcattactc 31132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 40145542 - 40145590
Alignment:
Q  61 ggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||||||||||| ||||  |||||||| ||||||||||||||||||||    
T  40145542 ggtgtacaagggtatatgagaataaagggtgtctatgtatcattactct 40145590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 16115296 - 16115249
Alignment:
Q  62 gtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||||||| |||||||  |||||||| ||||||||||||||||||||    
T  16115296 gtgtacaagagtgtatgagaataaagggtgtctatgtatcattactct 16115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 36732918 - 36732872
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctat 96  Q
    ||||| |||| ||||||||||||||||||| |||||||| |||||||    
T  36732918 ctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctat 36732872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 31009118 - 31009166
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||| ||||||||  |||||||| |||||||||| ||||    
T  31009118 catggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacatt 31009166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 35943862 - 35943814
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||| ||||||   |||||||||| ||||    
T  35943862 catggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatt 35943814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 33644324 - 33644383
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  33644324 ctaatgcatggggtgtataagggtgtatgggaataaagggtgtctatgtatcattactct 33644383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 53982135 - 53982193
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    ||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  53982135 ctaatgcatggggtgtacaaggttgtatgggaataaagggtgtctatgtatcattactc 53982193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 11095343 - 11095275
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaataaa 118  Q
    ||||| ||| |||||||||||||||||||  |||||||| |||||||||||||||||||| ||| ||||    
T  11095343 ctaatgcatcgggtgtacaagggtgtatgagaataaagggtgtctatgtatcattactcttaaattaaa 11095275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 31456813 - 31456877
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactctaaaaa 114  Q
    ||||| ||||||||||||||||||| |||| |||||||| ||| ||||||||||||||| |||||    
T  31456813 ctaatgcatggggtgtacaagggtgcatgggaataaagggtgtttatgtatcattactcaaaaaa 31456877  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 48587077 - 48587018
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  48587077 ctaatgcatgggatgtacaagggtatatgggaataaagggtgtctatgtatcattactct 48587018  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 52629424 - 52629483
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| |||||| ||||||||||||||||| ||||| || ||||||||||||||||||||    
T  52629424 ctaatgcatgggatgtacaagggtgtatggaaataatgggtgtctatgtatcattactct 52629483  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 54868871 - 54868812
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| ||| |||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  54868871 ctaatgcatagggtgtacaagggtgtatggaaataaaaggtgtctatgtatcattactct 54868812  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 49607550 - 49607596
Alignment:
Q  62 gtgtacaagggtgtatggtaataaaggttgtctatgtatcattactc 108  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||    
T  49607550 gtgtacaagggtgtatgggaataaagggtgtctatgtatcattactc 49607596  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 33118820 - 33118772
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||| |||||||| |||||| ||| ||||    
T  33118820 catggggtgtacaagggtgtatggaaataaagggtgtctacgtaacatt 33118772  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 11347891 - 11347844
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||| |||||||||||| |||||||| |||||||||| ||||    
T  11347891 atggggtgtataagggtgtatgggaataaagggtgtctatgtaccatt 11347844  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 26141499 - 26141452
Alignment:
Q  57 atggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||| |||||||| |||||||| |||||||||| ||||    
T  26141499 atggggtgtacaagagtgtatggaaataaagggtgtctatgtaacatt 26141452  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 27714877 - 27714822
Alignment:
Q  52 aatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattact 107  Q
    ||||||||||||||||||||||||| |  |||||||  ||| ||||||||||||||    
T  27714877 aatacatggggtgtacaagggtgtacgagaataaagagtgtatatgtatcattact 27714822  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 30801705 - 30801655
Alignment:
Q  54 tacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    |||||||||||||||||||||||||  |||||| | |||||||||| ||||    
T  30801705 tacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacatt 30801655  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 36707404 - 36707347
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattact 107  Q
    ||||| |||| ||||||||||  ||||||| |||||| | ||||||||||||||||||    
T  36707404 ctaatgcatgaggtgtacaagaatgtatgggaataaaaggtgtctatgtatcattact 36707347  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 9563123 - 9563179
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattac 106  Q
    ||||| |||| | ||||||| ||||||||| |||||||| | |||||||||||||||    
T  9563123 ctaatgcatgagttgtacaaaggtgtatgggaataaagggtatctatgtatcattac 9563179  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Complemental strand, 36331305 - 36331277
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatg 78  Q
    |||||||||||||||||||||||||||||    
T  36331305 ctaatacatggggtgtacaagggtgtatg 36331277  T

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Target: scaffold0150 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 8527 - 8575
Alignment:
Q  202 ttacctcatccattcccatctcaacaaccttttcctgcaatgcaccaac 250  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  8527 ttacctcatccattcccatctcaacaaccttttcctgcaaggtaccaac 8575  T

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Target: scaffold0321 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 10085 - 10026
Alignment:
Q  50 ctaatacatggggtgtacaagggtgtatggtaataaaggttgtctatgtatcattactct 109  Q
    ||||| ||| |||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  10085 ctaatgcatagggtgtacaagggtgtatggaaataatgggtgtctatgtatcattactct 10026  T

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Target: scaffold1268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 899 - 851
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||| |||||||| |||||||| ||| |||||| ||||    
T  899 catggggtgtacaagagtgtatgggaataaagggtgtttatgtaacatt 851  T

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Target: scaffold1267 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 899 - 851
Alignment:
Q  56 catggggtgtacaagggtgtatggtaataaaggttgtctatgtatcatt 104  Q
    ||||||||||||||| |||||||| |||||||| ||| |||||| ||||    
T  899 catggggtgtacaagagtgtatgggaataaagggtgtttatgtaacatt 851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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