View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_56 (Length: 256)

Name: NF1627_low_56
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_56
NF1627_low_56
[»] chr3 (3 HSPs)
chr3 (17-256)||(4293202-4293428)
chr3 (17-73)||(497424-497480)
chr3 (109-143)||(1319191-1319225)
[»] chr8 (3 HSPs)
chr8 (18-143)||(26945668-26945797)
chr8 (18-66)||(3807375-3807423)
chr8 (110-146)||(18983794-18983830)
[»] chr5 (3 HSPs)
chr5 (17-140)||(12317934-12318061)
chr5 (17-142)||(6132806-6132935)
chr5 (109-139)||(28753400-28753430)
[»] chr4 (2 HSPs)
chr4 (75-147)||(30253036-30253108)
chr4 (17-69)||(9905694-9905746)
[»] chr7 (2 HSPs)
chr7 (76-143)||(2665643-2665710)
chr7 (17-144)||(1756794-1756925)
[»] chr2 (4 HSPs)
chr2 (109-143)||(21135029-21135063)
chr2 (109-144)||(29981249-29981284)
chr2 (111-143)||(29759907-29759939)
chr2 (21-73)||(39926351-39926403)
[»] chr1 (2 HSPs)
chr1 (110-146)||(18606095-18606131)
chr1 (88-143)||(27556185-27556240)
[»] chr6 (2 HSPs)
chr6 (113-143)||(13480871-13480901)
chr6 (17-63)||(21098561-21098607)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 4293428 - 4293202
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtaggg---ggtttcctgcggaaatttcacctaactccgctgataatt 113  Q
    ||||||||||||||||||||||||||| ||| |||| ||||| ||||||| || |||    |||||||||||||||||||||| |||||||| ||| |||    
T  4293428 aacaattacccacaaaggttatacctgggaacctaagtccttagcaaaatccgcaggaaatggtttcctgcggaaatttcaccaaactccgcagatgatt 4293329  T
Q  114 ccgcaggaaaatcgagagtttctagtagtgatagcattttgctattttcttagtagtgcacaacataaactgttggcatctgtaccatttctaaaacatc 213  Q
    |||||||||||||||||||||||||                ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4293328 ccgcaggaaaatcgagagtttctag----------------ctattttcttagtagtgcacaacattaactattggcatctgtaccatttctaaaacatc 4293245  T
Q  214 atcttttatgtacacccttccaacttgcgtgtgaatttgtaat 256  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  4293244 atcttttatgtacacccttccaacttgcatgtgaattagtaat 4293202  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 497480 - 497424
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtagg 73  Q
    ||||||||||||| ||||||||| ||| ||| |||||||||| ||||||| ||||||    
T  497480 aacaattacccacgaaggttatatctgggaacctaaatccttagcaaaatccgtagg 497424  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 1319191 - 1319225
Alignment:
Q  109 taattccgcaggaaaatcgagagtttctagtagtg 143  Q
    ||||||||||||||| |||||||||||||||||||    
T  1319191 taattccgcaggaaattcgagagtttctagtagtg 1319225  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 26945797 - 26945668
Alignment:
Q  18 acaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtaggg----ggtttcctgcggaaatttcacctaactccgctgataatt 113  Q
    ||||||||| || ||||||||||||| ||| |||||||||||| ||| | ||||||     ||||||||| |||| ||||||| |  ||||| |||||||    
T  26945797 acaattaccaacgaaggttatacctgggaacctaaatccttggtaaattccgtaggaaacaggtttcctgtggaattttcaccaatatccgcagataatt 26945698  T
Q  114 ccgcaggaaaatcgagagtttctagtagtg 143  Q
    ||||||||| || |||||||||||||||||    
T  26945697 ccgcaggaatattgagagtttctagtagtg 26945668  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 3807423 - 3807375
Alignment:
Q  18 acaattacccacaaaggttatacctgagaatctaaatccttggcaaaat 66  Q
    ||||||||||||||||||||||| |||||| ||||||| |||| |||||    
T  3807423 acaattacccacaaaggttatacatgagaacctaaatcattggtaaaat 3807375  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 18983794 - 18983830
Alignment:
Q  110 aattccgcaggaaaatcgagagtttctagtagtgata 146  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  18983794 aattccgcaggaaactcgtgagtttctagtagtgata 18983830  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 12317934 - 12318061
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtagg----gggtttcctgcggaaatttcacctaactccgctgataat 112  Q
    ||||||||||||| ||||||||||||| ||| |||||||||| ||||||| | ||||      |||||||||| || |||||||||| | ||| | ||||    
T  12317934 aacaattacccacgaaggttatacctgggaacctaaatccttagcaaaatccataggaaatttgtttcctgcgaaattttcacctaaattcgccggtaat 12318033  T
Q  113 tccgcaggaaaatcgagagtttctagta 140  Q
    ||||| ||||||||||||| ||||||||    
T  12318034 tccgctggaaaatcgagagattctagta 12318061  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 6132935 - 6132806
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtaggg----ggtttcctgcggaaatttcacctaactccgctgataat 112  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||| ||| | || ||      |||||||||||||||||||||| |   |||| |||||     
T  6132935 aacaattacccacgaaggttatacctgggaacctaaatctttggtaaattccgcagaaaacaggtttcctgcggaaatttcaccaatagccgcagataac 6132836  T
Q  113 tccgcaggaaaatcgagagtttctagtagt 142  Q
    | |||||||||||||||| |||||| ||||    
T  6132835 ttcgcaggaaaatcgagaatttctaatagt 6132806  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 28753430 - 28753400
Alignment:
Q  109 taattccgcaggaaaatcgagagtttctagt 139  Q
    |||||||||||||||||||||||||||||||    
T  28753430 taattccgcaggaaaatcgagagtttctagt 28753400  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 30253108 - 30253036
Alignment:
Q  75 ggtttcctgcggaaatttcacctaactccgctgataattccgcaggaaaatcgagagtttctagtagtgatag 147  Q
    ||||||||||| || |||||||  | ||||| | ||||||| ||||||||||||||| |||||||||||||||    
T  30253108 ggtttcctgcgaaattttcaccccaatccgcaggtaattccacaggaaaatcgagagattctagtagtgatag 30253036  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 9905746 - 9905694
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcg 69  Q
    |||||||||||||||||||  || || ||||||||||| | ||||||||||||    
T  9905746 aacaattacccacaaaggtattatctaagaatctaaattcctggcaaaattcg 9905694  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 2665643 - 2665710
Alignment:
Q  76 gtttcctgcggaaatttcacctaactccgctgataattccgcaggaaaatcgagagtttctagtagtg 143  Q
    ||||||||||||| ||||||| || ||| | | ||||||||||| |||| ||||||||||||||||||    
T  2665643 gtttcctgcggaattttcaccaaagtccacgggtaattccgcagaaaaagcgagagtttctagtagtg 2665710  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 1756794 - 1756925
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtagg----gggtttcctgcggaaatttcacctaactccgctgataat 112  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||||| | || |||      ||||||||||||| |||| |     || || ||||||    
T  1756794 aacaattacccacaaaggttatacatgggaacctaaatccatggcaaattccgcaggaaacatgtttcctgcggaactttctctattatcagcagataat 1756893  T
Q  113 tccgcaggaaaatcgagagtttctagtagtga 144  Q
     || ||||||||||||||||||||||||||||    
T  1756894 cccccaggaaaatcgagagtttctagtagtga 1756925  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 21135029 - 21135063
Alignment:
Q  109 taattccgcaggaaaatcgagagtttctagtagtg 143  Q
    |||||||||||||||||||||||||||||||||||    
T  21135029 taattccgcaggaaaatcgagagtttctagtagtg 21135063  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 29981249 - 29981284
Alignment:
Q  109 taattccgcaggaaaatcgagagtttctagtagtga 144  Q
    |||||| |||||||||||||||||||||||||||||    
T  29981249 taattctgcaggaaaatcgagagtttctagtagtga 29981284  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 29759907 - 29759939
Alignment:
Q  111 attccgcaggaaaatcgagagtttctagtagtg 143  Q
    ||||||||||||||||||||||| |||||||||    
T  29759907 attccgcaggaaaatcgagagttactagtagtg 29759939  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 39926351 - 39926403
Alignment:
Q  21 attacccacaaaggttatacctgagaatctaaatccttggcaaaattcgtagg 73  Q
    |||||||||||||||  |||||||||| | ||||| |||||||||| ||||||    
T  39926351 attacccacaaaggtattacctgagaaccaaaatctttggcaaaatccgtagg 39926403  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 18606095 - 18606131
Alignment:
Q  110 aattccgcaggaaaatcgagagtttctagtagtgata 146  Q
    |||||||||||||||||||||| ||||||||||||||    
T  18606095 aattccgcaggaaaatcgagagattctagtagtgata 18606131  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 27556185 - 27556240
Alignment:
Q  88 aatttcacctaactccgctgataattccgcaggaaaatcgagagtttctagtagtg 143  Q
    ||||||||| || ||||| | ||||||||||||||||||||| ||||||| |||||    
T  27556185 aatttcacccaaatccgcgggtaattccgcaggaaaatcgagtgtttctaatagtg 27556240  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 13480871 - 13480901
Alignment:
Q  113 tccgcaggaaaatcgagagtttctagtagtg 143  Q
    |||||||||||||||||||||||||||||||    
T  13480871 tccgcaggaaaatcgagagtttctagtagtg 13480901  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 21098607 - 21098561
Alignment:
Q  17 aacaattacccacaaaggttatacctgagaatctaaatccttggcaa 63  Q
    ||||||||||||| ||||||||||| | ||| |||||||||||||||    
T  21098607 aacaattacccacgaaggttataccagggaacctaaatccttggcaa 21098561  T

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