View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_58 (Length: 250)
Name: NF1627_low_58
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 52711099 - 52711342
Alignment:
| Q |
1 |
tctgaccatgattgcgaaagaaaactacaatgttatgtcacaatcaaattattaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtg |
100 |
Q |
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| T |
52711099 |
tctgaccatgattgcgaaagaaaactacaatgt-----cacaatcaaattattaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtg |
52711193 |
T |
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| Q |
101 |
ccggccagcctacattatttgttacagccataaatcaattgtaacccaaataaaaat----gatgaccttgcctgattgagacgctttcttccactctgc |
196 |
Q |
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| T |
52711194 |
ccggccagcctacattatttgttacagccataaatcaattgtaacccaaataaaaatgatggatgaccttgcctgattgagacgctttcttacactctgc |
52711293 |
T |
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| Q |
197 |
taacctatataaaatgcaaaattagtgttacttttcatttcatctcact |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52711294 |
taacctatataaaatgcaaaattagtgttacttttcatttcatctcact |
52711342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 52720012 - 52720203
Alignment:
| Q |
51 |
attaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacccaaa |
150 |
Q |
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| T |
52720012 |
attaataccctaaatgcctgtgaagcctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccataaatcaactgtaacccaaa |
52720111 |
T |
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| Q |
151 |
taaaaatgatgaccttgcctgattgagacgctttcttccactctgctaacctatataaaatgcaaaattagtgttacttttcatttcatctcact |
245 |
Q |
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| T |
52720112 |
taaaa---atgaccctgcctgatcgagacgctttcttccactctgctaacatatataaaatgtaaaattagtgttacttttcatttcatctcact |
52720203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52718100 - 52718132
Alignment:
| Q |
1 |
tctgaccatgattgcgaaagaaaactacaatgt |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52718100 |
tctgaccatgattgcgaaagaaaactacaatgt |
52718132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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