View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_59 (Length: 250)
Name: NF1627_low_59
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_59 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 43635030 - 43634796
Alignment:
| Q |
15 |
tatgtagtaaattatttaaagtttaggtcaatacataaagaaaatgatgacatcaaagattcaacgtcttttgaagtgcttatgtcggataggacagaat |
114 |
Q |
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| T |
43635030 |
tatgtagtaaattatttaaagtttaggtcaatacataaagaaaatgatgacatcaaagattcaacgtcttttgaagtgcttatgtcggataggacagaat |
43634931 |
T |
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| Q |
115 |
atcttctttctttataaaaaacatgtgtcattatgaaaagtttttggaaatttttcttcaagaatctgctctctccgagcacaaaacacttgcgtcctac |
214 |
Q |
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| T |
43634930 |
atcttctttctttataaaaaacatgtgtcattatgaaaagttttgggaaatttttcttcaagaatctgctcac-cccagcacaaaacactcacgtcctgc |
43634832 |
T |
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| Q |
215 |
aatgttatcgaaaatgcccctacgttagttaactaa |
250 |
Q |
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| T |
43634831 |
aatattgttaaaaatgtctctgcattagttaactaa |
43634796 |
T |
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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 185395 - 185451
Alignment:
| Q |
194 |
cacaaaacacttgcgtcctacaatgttatcgaaaatgcccctacgttagttaactaa |
250 |
Q |
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| T |
185395 |
cacaaaacactcgcgccctacagtgttgccgaaaatgcccctgcgttagttaactaa |
185451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 187351 - 187295
Alignment:
| Q |
194 |
cacaaaacacttgcgtcctacaatgttatcgaaaatgcccctacgttagttaactaa |
250 |
Q |
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| T |
187351 |
cacaaaacacccgcgtcctgcagtgttatcgaaaatgcccatgcgttagttaactaa |
187295 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 30842209 - 30842151
Alignment:
| Q |
192 |
agcacaaaacacttgcgtcctacaatgttatcgaaaatgcccctacgttagttaactaa |
250 |
Q |
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|||||||||||||||||| ||||| |||| |||||||||| | | || ||||||||||| |
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| T |
30842209 |
agcacaaaacacttgcgttctacagtgttgtcgaaaatgctcatgcgctagttaactaa |
30842151 |
T |
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