View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1627_low_61 (Length: 249)
Name: NF1627_low_61
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_61 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 9573939 - 9574183
Alignment:
| Q |
7 |
tccaagaatatattattaataaaaacaaaacaaatatgtatggagggacatagcccaaacccaaagataaaagaaaattgtaagaaatattgatcgtcat |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
9573939 |
tccaagaaaatattattaataaaaacaaaacaagtatgtatggagggacatagcccaaatccaaagataaa-gaaaattgtaagagatattgatcgtcat |
9574037 |
T |
|
| Q |
107 |
ttcattcatttgatcaatgatatatatacataaaatagtctcttagccatctccacaatcgaaattgaaagtta---aatctctaaaatcactataaaaa |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9574038 |
ttcattcatttgatcaataatatatatacataaaatagtctcttagccatctccaaaatcgaaattgaaagttaaataatctctaaaatcactataaaaa |
9574137 |
T |
|
| Q |
204 |
gtagcaacataagtccctttgtgaagataatagcaaatcgataatg |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9574138 |
gtagcaacgtaagtccctttgtgaagatgttagcaaatcgataatg |
9574183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 9565096 - 9565316
Alignment:
| Q |
24 |
aataaaaacaaaacaaatatgtatggagggacatagcccaaacccaaagataaaagaaaattgtaagaaatattgatcgtcatttcattcatttgatcaa |
123 |
Q |
| |
|
||||||||| || ||||||| |||| ||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
9565096 |
aataaaaaccaaccaaatatatatgaagggacataacccaaacccaaagataaa-gaaaattgtaagagatattggtcgtcatttcatttatttgatcaa |
9565194 |
T |
|
| Q |
124 |
tgatatatatacataaaatagtctcttagccatctccacaatcgaaattgaaagttaaatctctaaaatcactataaaaagtagcaacataagtcccttt |
223 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||| || ||||||||||||| | ||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
9565195 |
tgatatatatatataaaatagtcttttaaccatctcctcagtcgaaattgaaagatgaatctctaaaatcac--taaaaagtagcaacgtaagtctcttt |
9565292 |
T |
|
| Q |
224 |
gtgaagataatagcaaatcgataa |
247 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
9565293 |
gtgaagatgttagcaaatcgataa |
9565316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University