View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_62 (Length: 246)
Name: NF1627_low_62
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 55641785 - 55641556
Alignment:
| Q |
1 |
ccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaat |
100 |
Q |
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| T |
55641785 |
ccatattctgttagctggtgtgtccatacatttcattacatactcttat-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaat |
55641687 |
T |
|
| Q |
101 |
gttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacactaattg |
200 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55641686 |
gttacataatcaagcttacaaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattcatgcacactaattg |
55641587 |
T |
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| Q |
201 |
tttcaaataataagtaaatcatagatatcat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
55641586 |
tttcaaataataagtaaatcatagatatcat |
55641556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42662146 - 42661917
Alignment:
| Q |
1 |
ccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaat |
100 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662146 |
ccatattctgttagctggtgggtccatacatttcattacatactcttgt-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtgtaat |
42662048 |
T |
|
| Q |
101 |
gttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacactaattg |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42662047 |
gttacataatcaagcttataaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacactcattg |
42661948 |
T |
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| Q |
201 |
tttcaaataataagtaaatcatagatatcat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42661947 |
tttcaaataataagtaaatcatagatatcat |
42661917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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