View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1627_low_66 (Length: 238)

Name: NF1627_low_66
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1627_low_66
NF1627_low_66
[»] chr3 (2 HSPs)
chr3 (18-155)||(11615980-11616114)
chr3 (183-228)||(11616115-11616160)
[»] chr2 (2 HSPs)
chr2 (19-72)||(8715343-8715396)
chr2 (29-72)||(8671695-8671738)
[»] chr6 (1 HSPs)
chr6 (29-72)||(35078875-35078918)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 11615980 - 11616114
Alignment:
Q  18 ccaaaagttaacacgatgcatttgatttttcttgaaatctatcacctgatacattnnnnnnnnnnnnnntcgaagaaatatacttaaatcaaaccctaat 117  Q
    |||||||||| |||||||||||||||||| ||| ||||||| |||||||||||||              || ||||||||||||||||||||||||||||    
T  11615980 ccaaaagttagcacgatgcatttgattttccttaaaatctaacacctgatacattaaaaaaaaaaa---tcaaagaaatatacttaaatcaaaccctaat 11616076  T
Q  118 attgttaatcaataaaccttatgtaaattcaacccacg 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11616077 attgttaatcaataaaccttatgtaaattcaacccacg 11616114  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 11616115 - 11616160
Alignment:
Q  183 ttaatccactcaagatctatgcatatgttcatcaaataagaattat 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  11616115 ttaatccactcaagatctatgcatattttcatcaaataagaattat 11616160  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 8715343 - 8715396
Alignment:
Q  19 caaaagttaacacgatgcatttgatttttcttgaaatctatcacctgatacatt 72  Q
    ||||| |||||||||||||||||||||| || |||||||| ||| |||||||||    
T  8715343 caaaatttaacacgatgcatttgattttcctagaaatctagcacttgatacatt 8715396  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 8671738 - 8671695
Alignment:
Q  29 cacgatgcatttgatttttcttgaaatctatcacctgatacatt 72  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  8671738 cacgatgcatttgattttcctagaaatctagcacctgatacatt 8671695  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 35078918 - 35078875
Alignment:
Q  29 cacgatgcatttgatttttcttgaaatctatcacctgatacatt 72  Q
    |||||||||||||||||| || |||||||| |||||||||||||    
T  35078918 cacgatgcatttgattttcctagaaatctagcacctgatacatt 35078875  T

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