View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_67 (Length: 235)
Name: NF1627_low_67
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 32457971 - 32457754
Alignment:
| Q |
1 |
tgctgtgggaaatcgagcctcgtttccatcaccttctgttcctacgacaaatatgcaaacgggtggaattgaaccgcttacaggagagccatactttcat |
100 |
Q |
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| T |
32457971 |
tgctgtgggaaatcgagcctcgtttccatcaccttctgttcctacgacaaatatgcaaacgggtggaattgaaccgcttacaggagagccatactttcat |
32457872 |
T |
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| Q |
101 |
gtcgtcctttcgaaaacacatcttagtacccgttatggaatggtaatttcattcttgatttcacaaaaggaagaaaaaatatagtatcacactttgagca |
200 |
Q |
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| T |
32457871 |
gtcgtcctttcgaaaacacatcttagtacccgttatggaatggtaatttcattcttgatttcacaaaaggaagaaaaaatatagtatcacactttgagca |
32457772 |
T |
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| Q |
201 |
gaacaatactatcctttg |
218 |
Q |
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|||||||||||||||||| |
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| T |
32457771 |
gaacaatactatcctttg |
32457754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 52 - 213
Target Start/End: Original strand, 22308177 - 22308343
Alignment:
| Q |
52 |
tatgcaaacgggtggaattgaaccgcttacaggagagccatactttcatgtcgtcctttcgaaaacacatcttagtacccgttatggaatggtaatttca |
151 |
Q |
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| T |
22308177 |
tatgcaattgggtggaattaagccgctatcaagagagccatactttcatgtggtcctttcaaaaacacaccttagtccccgttatggaatggtaatttca |
22308276 |
T |
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| Q |
152 |
ttcttgatttcacaaaaggaagaaa--aa---atatagtatcacactttgagcagaacaatactatc |
213 |
Q |
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| T |
22308277 |
tacttggttttacaaaaggaagaaattaaagcatatagtatcacactttgtgcagaacaatactatc |
22308343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 213
Target Start/End: Original strand, 39885116 - 39885282
Alignment:
| Q |
52 |
tatgcaaacgggtggaattgaaccgcttacaggagagccatactttcatgtcgtcctttcgaaaacacatcttagtacccgttatggaatggtaatttca |
151 |
Q |
| |
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||||||||||||||||||| | |||||| || ||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||| |
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| T |
39885116 |
tatgcaaacgggtggaattaagccgctttcaagagagccatactttcatgtggtcctttcaaaaacacaccttagtccccgttatggaatggtaatttca |
39885215 |
T |
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| Q |
152 |
ttcttgatttcacaaaaggaagaaa--aa---atatagtatcacactttgagcagaacaatactatc |
213 |
Q |
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| T |
39885216 |
tacttggtttcacaaaaggaagaaattaaagcatatagtatcacactttgtgcagaacaatactatc |
39885282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 13419839 - 13419673
Alignment:
| Q |
52 |
tatgcaaacgggtggaattgaaccgcttacaggagagccatactttcatgtcgtcctttcgaaaacacatcttagtacccgttatggaatggtaatttca |
151 |
Q |
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||||||||||||||||||| | |||||| || ||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||| |
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| T |
13419839 |
tatgcaaacgggtggaattaagccgctttcaagagagccatactttcatgtggtcctttcaaaaacacaccttagtccccgttatggaatggtaatttca |
13419740 |
T |
|
| Q |
152 |
ttcttgatttcacaaaaggaagaaa--aa---atatagtatcacactttgagcagaacaatactatc |
213 |
Q |
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| | || |||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
13419739 |
tacatggtttcacaaaaggaagaaattaaagcatatagtatcacactttctgcagaacaatactatc |
13419673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 37349752 - 37349631
Alignment:
| Q |
55 |
gcaaacgggtggaattgaaccgcttacaggagagccatactttcatgtcgtcctttcgaaaacacatcttagtacccgttatggaatggtaatttcattc |
154 |
Q |
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| T |
37349752 |
gcaaacgggtggaactaagccgctttcaagagagccatactttcatgtggtgctttcagaaacacactttagtccccgttatggaatggtaatttcatac |
37349653 |
T |
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| Q |
155 |
ttgatttcacaaaaggaagaaa |
176 |
Q |
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||| |||||||||||||||||| |
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| T |
37349652 |
ttggtttcacaaaaggaagaaa |
37349631 |
T |
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