View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1627_low_7 (Length: 630)
Name: NF1627_low_7
Description: NF1627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1627_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 1663107 - 1662495
Alignment:
| Q |
1 |
atgaaacacttacgcggacatcagatacgacattgacacaacttagtgccatgaaacacttacacagatattggatatgacattgacacgacttagtgct |
100 |
Q |
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|||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1663107 |
atgaaacacttagggggacatcagatacaacattgacacaacttagtgccatgaaacacttacacagatattggatatgacattgacacgacttagtgct |
1663008 |
T |
|
| Q |
101 |
atgaaacacttataggaacatcgaatacgacattgacaccatttgaacaaatttggttgtaatcataagtgttagtgtcgtactttgacgtatatcagac |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1663007 |
atgaaacacttatacgaacatcgaatacgacattgacaccacttgaacaaatttgattgtaattataagtgttagtgtcgtactttgacgtatatcagac |
1662908 |
T |
|
| Q |
201 |
aagacaccaaacatgttttcaatcaaaagcgtttggtgctatagaactttatgcatgtttgcttcggtggtggtgaaaactgattttgattacatgtaag |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1662907 |
aagacaccaaacatgttttcaatcaaaagcgtt-ggtgctatagaacttaatgcatgtttgcttcggtggtgatgaaaactgattttgattacatgtaag |
1662809 |
T |
|
| Q |
301 |
ttgaatgtaaagtaaattatgtttaataagagttagttgaaaaacagatttcgtttaaaaatcatgtttagactaaaaagttacaaattctaacttcaag |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1662808 |
ttgaatgtaaagtaatttatgtttaataagagttagttgaaaaacaaatttcgtttaaaaatcatgtttagactaaaaagttacaagttctaacttcaag |
1662709 |
T |
|
| Q |
401 |
taataatctattctaaagacaaaaccaaattgtactcaagagcaatcaaacatattaaaatcaattttacacattcattatcaattctaactgcttcaaa |
500 |
Q |
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| T |
1662708 |
ttataatctattctaaagacaaaaccaaattgtactcaagagcaatcaaacaaatcaaaatcaattttacacattcattatcaattctaactacttcaaa |
1662609 |
T |
|
| Q |
501 |
cgaggaaccaaacttaaatttaaattcaactgaatctcactaaaattatgtaaagcctttacgatttatttattgtatggtgacgtgctcagtttgacca |
600 |
Q |
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| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
1662608 |
caaggaaccaaacttaaattcaaattcaactgaatctcactaaaattatgtaaagcctttacgatttatttattgtatggtgacgtgctgagtttgatca |
1662509 |
T |
|
| Q |
601 |
aagcacagtgatct |
614 |
Q |
| |
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|||| ||||||||| |
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| T |
1662508 |
aagcgcagtgatct |
1662495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 836129 - 836194
Alignment:
| Q |
447 |
caaacatattaaaatcaattttacacattcattatcaattctaactgcttcaaacgaggaaccaaa |
512 |
Q |
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||||||| | |||||||||||||||||| || ||||| ||||||| ||||||||| ||||||||| |
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| T |
836129 |
caaacatgtcaaaatcaattttacacatccaaaatcaactctaactacttcaaacgtggaaccaaa |
836194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 501
Target Start/End: Original strand, 11271570 - 11271714
Alignment:
| Q |
357 |
aaaaatcatgtttagactaaaaagttacaaattctaacttcaagtaataatctattctaaagacaaaaccaaattgtactcaagagcaatcaaacatatt |
456 |
Q |
| |
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|||| ||||||||||||| ||||| ||||||| ||| |||||||| | |||| ||||| || ||||| ||||| |||| | ||||| || || | | |
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| T |
11271570 |
aaaagtcatgtttagactcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaaataccactcgacagcaaccatacttgtc |
11271669 |
T |
|
| Q |
457 |
aaaatcaattttacacattcattatcaattctaactgcttcaaac |
501 |
Q |
| |
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|||||||||||||||| | || ||||||||| ||||| ||||| |
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| T |
11271670 |
aaaatcaattttacacttccagaatcaattctggctgctccaaac |
11271714 |
T |
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