View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1628-INSERTION-1 (Length: 219)
Name: NF1628-INSERTION-1
Description: NF1628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1628-INSERTION-1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 43992258 - 43992470
Alignment:
| Q |
7 |
agtacaacataaatactcaaaaacaggaaaaacacgcaaaattagagggaaattcaaacttaataatcataatcaactttgtcatttcatgtcaaaataa |
106 |
Q |
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| T |
43992258 |
agtacaacataaatactcaaaaacaggaaaaacacgcaaaattagagggaaattcaaacttaataatcataatcaactttgtcatttcatgtcaaaataa |
43992357 |
T |
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| Q |
107 |
gcactaaatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaatcacttttctaaatgtatcatattattgccggtatcacttgtcatttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43992358 |
gcactaaatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaatcacttttctaaatgtatcatattattgccggtatcacttgtcatttc |
43992457 |
T |
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| Q |
207 |
ccatcacttttca |
219 |
Q |
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| T |
43992458 |
ccatcacttttca |
43992470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 45463724 - 45463663
Alignment:
| Q |
98 |
tcaaaataagcactaaatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaat |
159 |
Q |
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| T |
45463724 |
tcaaaataagctctaaatgtaatctaaatgacatcccaacaaaatcaagttctaaatgtaat |
45463663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 20797974 - 20798117
Alignment:
| Q |
13 |
acataaatactcaaaaacaggaaaaacacgcaaaattagagggaaattcaaacttaataatcataatcaactttgtcatttcatgtcaaaataagcacta |
112 |
Q |
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| T |
20797974 |
acataaaaactcaaaaacag-aaaaatacacaaaattaaagggaaaatcaaacttaataaacataatcaact--gtcatttcccatcaaaataagatcta |
20798070 |
T |
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| Q |
113 |
aatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaat |
159 |
Q |
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| T |
20798071 |
aatgtaaaacaactgaaatcacaacaaaatcaagttctaaatgtaat |
20798117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 44864549 - 44864693
Alignment:
| Q |
13 |
acataaatactcaaaaacaggaaaaacacgcaaaattagagggaaattcaaacttaataatcataatcaactttgtcatttcatgtcaaaataagcacta |
112 |
Q |
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| T |
44864549 |
acataaatactcaaaaatag-aaatatacacaaaattaaagggacagtcatacttaat--ttataattaactttgtcaattcccaccaaaataagttcta |
44864645 |
T |
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| Q |
113 |
aatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaatc |
160 |
Q |
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| T |
44864646 |
aatgtaatcaaaatgacatcccatcaaaatcaagttcaaaatgtaatc |
44864693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 16623038 - 16623102
Alignment:
| Q |
64 |
acttaataatcataatcaactttgtcatttcatgtcaaaataagcactaaatgtaatcgaaatga |
128 |
Q |
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| T |
16623038 |
acttaataactataatcaactttgtcatttcacatcaaaattagttctaaatgtaatcaaaatga |
16623102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 104852 - 104767
Alignment:
| Q |
75 |
ataatcaactttgtcatttcatgtcaaaat-aagcactaaatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaat |
159 |
Q |
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| T |
104852 |
ataatcaactttgtcatttcctatcagaatcaagttctaaatgtaatcaaaatgacattccagcaaaatcaagttctaaaagtaat |
104767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 26029582 - 26029534
Alignment:
| Q |
46 |
aattagagggaaattcaaacttaataatcataatcaactttgtcatttc |
94 |
Q |
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| T |
26029582 |
aattaaagggacagtcatacttaataattataatcaactttgtcatttc |
26029534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 6394836 - 6394752
Alignment:
| Q |
77 |
aatcaactttgtcatttcatgtcaaaataagcactaaatgtaatcgaaatgaaatcacaacaaaatcaagttttaaatgtaatca |
161 |
Q |
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| T |
6394836 |
aatcaactttgtaatttcccatcaaaataagctttgaatataatcaaaatgacatcccatcaaaatcaagttcaaaatgtaatca |
6394752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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