View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1628-INSERTION-2 (Length: 344)
Name: NF1628-INSERTION-2
Description: NF1628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1628-INSERTION-2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 29295694 - 29296019
Alignment:
| Q |
20 |
gcaaatatgtagcactgacacttcacatagaaggcgtttctaaatttaattatttcattctttttccaagttattacaatgtgccagtatcaaatatttg |
119 |
Q |
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| T |
29295694 |
gcaaatatgtagcactgacacttcacatagaaggcgtttctaaatttaattatttcattctttttccaagttattacaacgtgccagtatcaaatattcg |
29295793 |
T |
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| Q |
120 |
tgtctttgtttcattcgtgattaaacgtggttgcagaaatctcaaaaaccttgacattgcagccaaagt-agcggttgcggacctttattataaaacctt |
218 |
Q |
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| T |
29295794 |
tgtctttgtttcattcgtgattaaacgtggttgcagaaatctcaaaaaccttgacattgcagccaaagtaagcggttgcggacctttattataaaacctt |
29295893 |
T |
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| Q |
219 |
gctcacaatgtgttgtcttatgattgcagtgaaattaggtcctaaattttctaagactttgaagggtaagttaagtttaggtgccaaaattattcaagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295894 |
gctcacaatgtgttgtcttatgattgcagtgaaattaggtcctaaattttctgagactttgaagggtaagttaagtttaggtgccaaaattattcaagaa |
29295993 |
T |
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| Q |
319 |
ggtggaagaggtaacattttcaagca |
344 |
Q |
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| T |
29295994 |
ggtggaagaggtaacattttcaagca |
29296019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 42395607 - 42395506
Alignment:
| Q |
241 |
attgcagtgaaattaggtcctaaattttctaagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttca |
340 |
Q |
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|||||||| ||| ||||||||||| | || ||||| ||||||||||||| ||||| ||||| | || || ||||||||||| ||||| |||||||||| |
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| T |
42395607 |
attgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttca |
42395508 |
T |
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| Q |
341 |
ag |
342 |
Q |
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|| |
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| T |
42395507 |
ag |
42395506 |
T |
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