View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1628-INSERTION-3 (Length: 576)
Name: NF1628-INSERTION-3
Description: NF1628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1628-INSERTION-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 18216610 - 18216270
Alignment:
| Q |
13 |
ttaagacaatatcccttgcacctagtttgtcatgcctccgaaaaagtttcacaaattaaacaatgtacaacaaattgtcatgtccctcactttttaaccg |
112 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
18216610 |
ttaagacaatatctcttgcatctagtttgtcatgcctctgaaaaagtttcacaaatcaaacagtgtacaacaaattgtcatgtccctcactttttaattg |
18216511 |
T |
|
| Q |
113 |
atcaaacaagcctttagatgctatttcgcaaaataagtgttctcaaaaaataaataatatacaaatgctaaacatttggtgatattattttcaccaacac |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18216510 |
atcaaacaaacctttagatgctatttcgcaaaataagtgttctcaaaaaataaataatatacaaatgctaaacatttggtgatattattttgaccaacac |
18216411 |
T |
|
| Q |
213 |
tttttctcctagtaatagacaaagatgtgtcacttgtacctttttaagtagaagatttgtcgattatggtttatctttcatactacatgctagactagat |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18216410 |
ttgttctcctagtaatagacaaagatgtgtcaattgtacctttttaagtagaagatttgtcgattatggtttatctttcatactacatgctagactagat |
18216311 |
T |
|
| Q |
313 |
aaggttccaaatggccttcgatttccagcagaacaccatta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18216310 |
aaggttccaaatggccttcgatttccagcataacaccatta |
18216270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 382 - 576
Target Start/End: Complemental strand, 18216191 - 18215993
Alignment:
| Q |
382 |
cattacagaaaataattattgaacgtacaattaatttagtccagaagctataacttctcgccaataaatatcgaccaaaaagtccttaaaccat----nn |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
18216191 |
cattacagaaaataattattgaacgtacaattaatttagtccagaagctataacttctcgccaataaatatcgaccaaaaattccttaaactataaaaaa |
18216092 |
T |
|
| Q |
478 |
nnnnnnnnnntacatcaatttagattctaaaccatcatgaaaattaaccaatattgttaaccgagggactacacaattggatggaaagataggtctagg |
576 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
18216091 |
aaaaaaaaaaaacatcaattaagtttctaaaccattatgaaaattaaccaatattgttaaccgagggactacataattggatggaagaataggtctagg |
18215993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 129 - 340
Target Start/End: Complemental strand, 43008875 - 43008667
Alignment:
| Q |
129 |
gatgctatttcgcaaaataagtgttctcaaaaaataaataatatacaaatgctaaacatttggtgatattattttcaccaacactttttctcctagtaat |
228 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||| ||||||| ||| ||||| ||||||| || |||||||||| ||||||||||||| |
|
|
| T |
43008875 |
gatgttatttcgcaaaacaagtgttcttcaaaaataaataatattcaaatgccaaatatttgatgatatt---ttaaccaacacttcttctcctagtaat |
43008779 |
T |
|
| Q |
229 |
agacaaagatgtgtcacttgtacctttttaagtagaagatttgtcgattatggtttatctttcatactacatgctagactagataaggttccaaatggcc |
328 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
43008778 |
agacaaagatgtgtccattgtgcttttttaagtagaagatttgtcaattatggtttatctttcatactacatactagataagataaggttccaaatggcc |
43008679 |
T |
|
| Q |
329 |
ttcgatttccag |
340 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43008678 |
ttcgatttccag |
43008667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University