View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16280_high_2 (Length: 452)
Name: NF16280_high_2
Description: NF16280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16280_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 38237939 - 38237494
Alignment:
| Q |
1 |
caactctatatggacaggtaacttaagtcattcttaaatgcttggtgtcggctcaatgggaatattttgacattgtgacttcaagagacagagttcaaac |
100 |
Q |
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| T |
38237939 |
caactctatatggacaggtaacttaagtcattcttaaatgcttggtgtcggctcaatgggaatattttgacattgtgacttcaagagacagagttcaaac |
38237840 |
T |
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| Q |
101 |
cccctcga--acaattgtataactgatatatcattttctaataatgattcttcctctaaaaataaactataaattattaccnnnnnnnn-agtcttagca |
197 |
Q |
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| T |
38237839 |
cccctcgagaacaattgtataactgatatatcattttctaataatgattcttcctctaaaaataaactataaattatcacctttttttttagtcttagca |
38237740 |
T |
|
| Q |
198 |
cgtgattgttttcaattgatagtaagaaatgtttagctaacaagaaaatagtgtgatttattggctattgaggaccgtcaatgtttctttttgttgagtt |
297 |
Q |
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| T |
38237739 |
cgtgattgttttcaattgatagtaagaaatgtttagctaacaagaaaatagtttgatttattagctattgaggaccgtcaatgtttctttttgttgagtt |
38237640 |
T |
|
| Q |
298 |
tattaacacgggtatggttcaagggctatcttgtaaacttgaccttagtatttatacacgagttgtaatatgttaaactagacggtagacataattgacc |
397 |
Q |
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| T |
38237639 |
tattaacacgggtatggttcaagggctatcttgtaaacttgaccttagtatttatacacgagttgtaatatgttaaactaaacggtagacataattgacc |
38237540 |
T |
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| Q |
398 |
gaacgccattatcgaatttcgtatgttctctttttgtgtttttcat |
443 |
Q |
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| T |
38237539 |
gaacgccattatcgaatttcgtatgttctctttttgtgtttttcat |
38237494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 406
Target Start/End: Complemental strand, 38213780 - 38213627
Alignment:
| Q |
255 |
ttattggctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtat--ggttcaagggctatcttgtaaacttgaccttagtatttat |
352 |
Q |
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|||||||| | ||||||| || ||||| ||||||||||||| ||| |||||||||| |||||| ||| ||||| | ||| || ||| ||||| |
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| T |
38213780 |
ttattggcaactgaggactatctatgttcttttttgttgagttgattgacacgggtatatggttcaggggtaatcttatcaaccaaactgtagcatttaa |
38213681 |
T |
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| Q |
353 |
acacgagttgtaatatgttaaactagacggtagacataattgaccgaacgccat |
406 |
Q |
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||| ||||||||||| ||||||||||| ||||||| ||||| ||||||||||| |
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| T |
38213680 |
acagaagttgtaatatattaaactagacagtagacacaattggccgaacgccat |
38213627 |
T |
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