View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16280_high_4 (Length: 285)
Name: NF16280_high_4
Description: NF16280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16280_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 4179482 - 4179223
Alignment:
| Q |
10 |
catcatcatgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgagcctctaatagtcgaattccagaatcattagacacaatttc |
109 |
Q |
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| T |
4179482 |
catcatcgtgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgagcctctaagagtcgaattccagaatcattagacacaatttc |
4179383 |
T |
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| Q |
110 |
caatcctgttatgtccnnnnnnnggactcgaccagctagtagaggatgatccaataaggccctagcaagtgattccacaatccaaccagttaaggaccaa |
209 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179382 |
caatcctgttatgtcccttttttggactcgaccagccagtagaggatgatccaataaggccctagcaagtgattccacaatccaaccagttaaggaccaa |
4179283 |
T |
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| Q |
210 |
tcatgatcctcctcttcaaccttctcatagtacaataccatttggtagcatccctcaatt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179282 |
tcatgatcctcctcttcaaccttctcatagtacaataccatttggtagcatccctcaatt |
4179223 |
T |
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