View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16280_high_5 (Length: 265)
Name: NF16280_high_5
Description: NF16280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16280_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 38248209 - 38248455
Alignment:
| Q |
10 |
atttccctccttatgatctgtgctgcaagattcaactgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggact |
109 |
Q |
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| T |
38248209 |
atttccctcctattgatctgtgctgcaagattcaactgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggact |
38248308 |
T |
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| Q |
110 |
agtgttatatatgttttaagagttaaactaagattgnnnnnnncaaacaatgaacatggattccctgcagtcgtgaaactctacattaattcaggcaatc |
209 |
Q |
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| T |
38248309 |
agtgttatatatgttttaagagttaaactaagattgagaaaaacaaacaatgagcatggattccctgcagtcgtgaaactctac----attcaggcaatc |
38248404 |
T |
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| Q |
210 |
atcgcaacaatcactgattaattgactaactaaatgctgagtataatctac |
260 |
Q |
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| T |
38248405 |
atcgcaacaatcactgattaattgactaactaaatgctgagtatattctac |
38248455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 38253362 - 38253533
Alignment:
| Q |
10 |
atttccctccttatgatctgtgctgcaagattcaactg-atactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggac |
108 |
Q |
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| T |
38253362 |
atttccctccttttgatctatgctgcaagatttaacttcatactcaacctgaaacaaagaaatctatgttgctcgcattatacccaacaacttaatggac |
38253461 |
T |
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| Q |
109 |
tagtgttatatatgttttaagagttaaactaagattgnnnnnnncaaacaatgaacatggattccctgcagt |
180 |
Q |
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| T |
38253462 |
tagtgttatatatgttttaagagttaaactaagattgagataaacaaacaacaaatatggattccctgcagt |
38253533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 38238025 - 38238117
Alignment:
| Q |
1 |
aacacaggaatttccctccttatgatctgtgctgcaagattcaac-tgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacc |
92 |
Q |
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| T |
38238025 |
aacacaggaatttccctccttatggtctgtgctgcaagattcaacttgatactcattctgaaacaaagaaaaccatgttgctcactatatacc |
38238117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 38243009 - 38243082
Alignment:
| Q |
10 |
atttccctccttatgatctgtgctgcaagattcaac-tgatactcaacctgaaacaaagaaatctacgttgctc |
82 |
Q |
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| T |
38243009 |
attttcctccctatggtctgtgctgcaagattcaacttgatactcaatctgaaacaaagaaatccatgttgctc |
38243082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 38220154 - 38220217
Alignment:
| Q |
10 |
atttccctccttatgatctgtgctgcaagattcaact-gatactcaacctgaaacaaagaaatc |
72 |
Q |
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| T |
38220154 |
atttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaaagaaatc |
38220217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 38226505 - 38226603
Alignment:
| Q |
20 |
ttatgatctgtgctgcaagattcaac-tgatactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggactagtgttat |
117 |
Q |
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| T |
38226505 |
ttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttat |
38226603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 38214126 - 38214218
Alignment:
| Q |
20 |
ttatgatctgtgctgcaagattcaact-gatactcaacctgaaacaaagaaatctacgttgctcgcaatatacctaacaaactactggactagt |
112 |
Q |
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| T |
38214126 |
ttatgatctgtggtacaagattcaacttgatactcaacctgaaacaaa-aaatccatgttgctcactaaacacccaacaaagtaatggactagt |
38214218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 17454591 - 17454653
Alignment:
| Q |
10 |
atttccctccttatgatctgtgctgcaagattcaac-tgatactcaacctgaaacaaagaaat |
71 |
Q |
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| T |
17454591 |
atttccctcctcatggtctgtgctgcaagattcaacttgatactcaatctgaaacaaagaaat |
17454653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 17433512 - 17433585
Alignment:
| Q |
10 |
atttccctccttatgatctgtgctgcaagattcaact-gatactcaacctgaaacaaagaaatctacgttgctc |
82 |
Q |
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| T |
17433512 |
attttcctcctcatggtctctgctgcaagattcaacttgatactcaatctgaaacaaagaaatccatgttgctc |
17433585 |
T |
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