View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16280_low_1 (Length: 838)

Name: NF16280_low_1
Description: NF16280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16280_low_1
NF16280_low_1
[»] scaffold0048 (1 HSPs)
scaffold0048 (12-819)||(76072-76879)
[»] chr8 (1 HSPs)
chr8 (469-810)||(22561936-22562277)
[»] chr2 (4 HSPs)
chr2 (506-810)||(22499208-22499502)
chr2 (34-199)||(16932654-16932824)
chr2 (80-145)||(16932572-16932637)
chr2 (118-159)||(16932574-16932615)
[»] chr6 (1 HSPs)
chr6 (607-807)||(31138608-31138808)
[»] scaffold0512 (1 HSPs)
scaffold0512 (621-810)||(8088-8277)
[»] chr7 (5 HSPs)
chr7 (581-810)||(12347925-12348154)
chr7 (621-810)||(9694150-9694337)
chr7 (642-811)||(11801336-11801505)
chr7 (119-225)||(9694430-9694535)
chr7 (12-110)||(9694528-9694626)
[»] chr1 (4 HSPs)
chr1 (621-801)||(20947678-20947858)
chr1 (670-816)||(21494657-21494803)
chr1 (12-86)||(20947091-20947165)
chr1 (647-820)||(21499690-21499863)
[»] scaffold1405 (1 HSPs)
scaffold1405 (621-801)||(629-809)
[»] chr4 (3 HSPs)
chr4 (621-810)||(13560527-13560714)
chr4 (119-225)||(13560807-13560912)
chr4 (12-110)||(13560905-13561003)
[»] scaffold0103 (3 HSPs)
scaffold0103 (34-199)||(17452-17622)
scaffold0103 (80-145)||(17639-17704)
scaffold0103 (118-159)||(17661-17702)
[»] chr5 (6 HSPs)
chr5 (621-810)||(25582447-25582636)
chr5 (646-761)||(10190111-10190226)
chr5 (121-225)||(25582728-25582831)
chr5 (748-810)||(23907871-23907933)
chr5 (12-86)||(25582860-25582934)
chr5 (603-680)||(17458702-17458779)
[»] chr3 (1 HSPs)
chr3 (621-730)||(22924662-22924771)


Alignment Details
Target: scaffold0048 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 12 - 819
Target Start/End: Complemental strand, 76879 - 76072
Alignment:
Q  12 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacatcatggattcttcattactaaacatc 111  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||| |||||     
T  76879 acatcatcaacagctcacaattacaacataatttcatttgtcaaactcatcatttacgtgatcattaatcaacatcatcgcttcttcattactcaacatt 76780  T
Q  112 gtcgccactcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtactta 211  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  76779 gtcaccactcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttactacgtacttc 76680  T
Q  212 attctaacggcaacgcttcattcctcgtttctagtttaaggtttttacctcgccaattatcgttcttcctatcacttttattcccctcactaatacaaca 311  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  76679 attctaacggcaacgatccattcctcgtttctagtttaaggtttttacctcgccaattatcgttcttcctatgacttttattcccctcactaatacaaca 76580  T
Q  312 ttatatcctcttaattttcctcatcattaaggaccttataggagactagcccatctccccattaacagactttttgctccccgtcacgactagaatataa 411  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  76579 ttatatcctcttaaatttcctcatcattaatgaccttataggagactagtccatctccccattaacagattttttgttccccgtcacgactagaatataa 76480  T
Q  412 cctagtactttgtctcacattcattgtcatttatggcctcaatcatctaaatcatttattacctcactctaacttaggtttttatttctttagagattta 511  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  76479 cctagtactttgtctcacattcattgtcatttatgacctcaatcatcttcatcatttattacctcactctaacttaggtttttgtttctttagagattta 76380  T
Q  512 ctatcttgtctcttcactattattacccctgacatcatccattactcaacatagaactttcttaccccgttctaattcgtcttattagttttctcaacat 611  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  76379 ctatcttgtctcttcactattattacccctgacatcattcattactcaacatagaactttctttccccgttctaattcgtcttatcagttttctcaacat 76280  T
Q  612 catccatcatcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctac 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  76279 catccatcatcttaaatcgaccacacactattcattttaacttaaggtccttacctcaccattatcattatttctaacgttatcccttactttaacttac 76180  T
Q  712 gcctttctatttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacact 811  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  76179 gcctttctattttcaattatctttgtcttatttctccacctagcatcttcattaccttaaacctcttttttattctatttgttcattttggttctacact 76080  T
Q  812 cttctatc 819  Q
    ||||||||    
T  76079 cttctatc 76072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 9e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 469 - 810
Target Start/End: Original strand, 22561936 - 22562277
Alignment:
Q  469 attacctcactctaacttaggtttttatttctttagagatttactatcttgtctcttcactattattacccctgacatcatccattactcaacatagaac 568  Q
    ||||||||| |||||||||||| ||| ||||| ||| |||||| ||||||||||| |||||| ||||||| |||||||||| ||||| | |||| | ||     
T  22561936 attacctcattctaacttaggtctttttttctctagtgatttattatcttgtctcgtcactaatattacctctgacatcattcattaattaacacacaat 22562035  T
Q  569 tttcttaccccgttctaattcgtcttattagttttctcaacatcatccatcatcttaaatcgaccacacactattcattttaacttaatgtccttacctc 668  Q
    ||| |   ||||||||| ||| | |||| | || ||| ||||| ||| ||| |||||||||||||||||  | |||||||| |||||| ||| |||| ||    
T  22562036 tttttattcccgttctatttcattttatcaattctcttaacattatctatcctcttaaatcgaccacactttgttcattttcacttaaggtcgttacttc 22562135  T
Q  669 accattatcattatttctaacgttatcccttactttaacctacgcctttctatttccaattatctttgtcttatttctccacctagcttcttcattacct 768  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| |  || |||||||||||| ||| |||||||| || |||||| | |||| |||||||    
T  22562136 accattaacattatttctaacattatcccttactttaacttacacacttatatttccaattaccttcgtcttattccttcacctaacatcttaattacct 22562235  T
Q  769 taaacctcttcatcattctatttgttcattttggttctacac 810  Q
    |||||| ||||| ||| ||| ||||||||||||  |||||||    
T  22562236 taaaccacttcaccatcctacttgttcattttgaatctacac 22562277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 506 - 810
Target Start/End: Complemental strand, 22499502 - 22499208
Alignment:
Q  506 gatttactatcttgtctcttcactattattacccctgacatcatccattactcaacatagaactttcttaccccgttctaattcgtcttattagttttct 605  Q
    |||||| ||||||||||| ||||||| ||||||||| ||||||| ||||||| ||||||  ||||| |   |||| | || ||||| |||| | || ||     
T  22499502 gatttattatcttgtctcatcactataattacccctaacatcattcattacttaacatacgactttatattcccgctatatttcgttttatcaattctcc 22499403  T
Q  606 caacatcatccatcatcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttacttta 705  Q
    || ||||||| ||||| |          |||| |||||||| |||||||||  || |||  |||||||||| |||||||||||| |||||||||||||||    
T  22499402 cagcatcatctatcatat----------acactctattcatcttaacttaagatcgttatttcaccattattattatttctaacattatcccttacttta 22499313  T
Q  706 acctacgcctttctatttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttc 805  Q
    || ||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| || |||||||||| ||    
T  22499312 acttacacctttctatttccaattacctttgtcttatttcttcacctagcatcttcattaccttaaaccacttcatcattctactttttcattttggctc 22499213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 16932824 - 16932654
Alignment:
Q  34 acaacataatttcatttgtcagactcattatttacgtgatcattaa------tcaacatcatggattcttcattactaaacatcgtcgccactcaacatc 127  Q
    ||||||||||||||| ||| |||||||| |||||||| ||||| ||      |||||||||||| |||||||||||| |||||||||   |||||||||     
T  16932824 acaacataatttcatctgttagactcatcatttacgtcatcatcaacattattcaacatcatggtttcttcattactcaacatcgtcattactcaacatt 16932725  T
Q  128 gtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttattt 199  Q
    ||||||  ||| ||||||||||  |||||| |||| ||||||||||| |||||||||| | |||||||||||    
T  16932724 gtcatttctcagcattgtcatttatcaaca-ttgtaattaaaacctaaactcaacactggatccccttattt 16932654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 16932637 - 16932572
Alignment:
Q  80 tcaacatcatggattcttcattactaaacatcgtcgccactcaacatcgtcattattcaacattgt 145  Q
    |||||||||||| ||||||||||||  ||||||||   ||||||||| ||||||  ||||||||||    
T  16932637 tcaacatcatggtttcttcattactccacatcgtcattactcaacattgtcatttctcaacattgt 16932572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 16932615 - 16932574
Alignment:
Q  118 actcaacatcgtcattattcaacattgtcattactcaacatt 159  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  16932615 actccacatcgtcattactcaacattgtcatttctcaacatt 16932574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 607 - 807
Target Start/End: Complemental strand, 31138808 - 31138608
Alignment:
Q  607 aacatcatccatcatcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaa 706  Q
    ||||||||  ||| |||||| |||| ||||| ||||| ||||||||||||  || |||| ||||||||||||||||||||||   |||||||||||||||    
T  31138808 aacatcatttatcctcttaattcgagcacactctatttattttaacttaagttcgttacttcaccattatcattatttctaatagtatcccttactttaa 31138709  T
Q  707 cctacgcctttctatttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttct 806  Q
    | ||| ||||| |||||| ||||| ||| |||||||||||||  ||||| |||||||||||||||||| ||||| || |||| |||||||| ||||||||    
T  31138708 cttacacctttatatttcaaattaccttcgtcttatttctccgactagcatcttcattaccttaaaccacttcaccactctacttgttcatgttggttct 31138609  T
Q  807 a 807  Q
    |    
T  31138608 a 31138608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 621 - 810
Target Start/End: Original strand, 8088 - 8277
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    ||||||||| ||||||| |  ||||||||||| ||| ||| |||| |||||||||||||| ||||||||   ||||||||||||||| ||||||||| ||    
T  8088 tcttaaatctaccacacccatttcattttaacctaaggtcgttacttcaccattatcattctttctaacaccatcccttactttaacttacgcctttata 8187  T
Q  721 tttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacac 810  Q
    ||||||||||  || |||||||| || |||||||| || ||||||||||||||| ||||| | || || ||||||||||||| |||||||    
T  8188 tttccaattacgttcgtcttattccttcacctagcatcatcattaccttaaaccacttcaccgttttacttgttcattttggctctacac 8277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 581 - 810
Target Start/End: Complemental strand, 12348154 - 12347925
Alignment:
Q  581 ttctaattcgtcttattagttttctcaacatcatccatcatcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcatt 680  Q
    ||||| |||||||||| | || ||| ||||||||| ||| |||||||| |  | ||| |||||||||||||||||| ||| | || |||||| ||| |||    
T  12348154 ttctatttcgtcttatcaattctcttaacatcatctatcctcttaaattggtctcactctattcattttaacttaaggtcgtcacttcaccaatattatt 12348055  T
Q  681 atttctaacgttatcccttactttaacctacgcctttctatttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttca 780  Q
    |||||||||  | |||||||||||||| || |||||| |||||  ||||| ||| ||||||||||| | |||| | |||||||||||||||||| |||||    
T  12348054 atttctaaccatgtcccttactttaacttatgcctttatatttaaaattaccttcgtcttatttcttcgcctaacatcttcattaccttaaaccacttca 12347955  T
Q  781 tcattctatttgttcattttggttctacac 810  Q
     ||| ||| ||||||||||||| |||||||    
T  12347954 ccatcctacttgttcattttggctctacac 12347925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 621 - 810
Target Start/End: Complemental strand, 9694337 - 9694150
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    ||||||||||||||| || |  |||||||||| |||  || |||| ||||||||| |||| |||| |||   |||| |||||||||  ||||||||| ||    
T  9694337 tcttaaatcgaccactcatt--tcattttaacctaagttcgttacttcaccattaccattctttcaaacaacatcctttactttaatttacgcctttata 9694240  T
Q  721 tttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacac 810  Q
    ||| ||||||| ||||||||||| || |||||||| |||||||||||||||||| ||||| ||||||| ||||| ||||||| |||||||    
T  9694239 ttttcaattatgtttgtcttattccttcacctagcatcttcattaccttaaaccacttcaccattctacttgttaattttggctctacac 9694150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 642 - 811
Target Start/End: Complemental strand, 11801505 - 11801336
Alignment:
Q  642 ttcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttctatttccaattatctttgtctta 741  Q
    ||||||||||| |||  || |||| |||||||||||  | |||||||| | |||||||| |||||| ||||||||| ||||| ||||||  || ||||||    
T  11801505 ttcattttaacctaagttcgttacttcaccattatccatctttctaacatcatcccttattttaacttacgcctttatattttcaattacgttcgtctta 11801406  T
Q  742 tttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacact 811  Q
    || || |||||||| |||||||||||||||||| ||||| ||||||| ||||| ||||||| ||||||||    
T  11801405 ttccttcacctagcatcttcattaccttaaaccacttcaccattctacttgttaattttggatctacact 11801336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 9694535 - 9694430
Alignment:
Q  119 ctcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtacttaattctaa 218  Q
    |||||||| || |||| |||||||| ||||| || ||||||| | ||||||||  |||||||||| | ||||||||| ||| ||||| |||| |||||||    
T  9694535 ctcaacattgttattactcaacattttcatttcttaacattttt-attaaaactcacactcaacattggctccccttgtttactacgcacttcattctaa 9694437  T
Q  219 cggcaac 225  Q
    |||||||    
T  9694436 cggcaac 9694430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 9694626 - 9694528
Alignment:
Q  12 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacatcatggattcttcattactaaacat 110  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||  |||| |||  ||||||||| || |||||    
T  9694626 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatgtacattatgatttcttcattgctcaacat 9694528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 621 - 801
Target Start/End: Original strand, 20947678 - 20947858
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    |||||||| |||||||| |  ||||||||||| |||  || |||  |||||||||||| | |||||||| ||||| ||||||||||| ||||||||| ||    
T  20947678 tcttaaattgaccacactcatttcattttaacctaagttcgttatttcaccattatcaatgtttctaacattatctcttactttaacttacgcctttata 20947777  T
Q  721 tttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttg 801  Q
    ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||  |||| ||||||| ||||| ||||||    
T  20947778 tttccaattatgttcgtcttatttcttcacctagcatcttcattaccttaaaccatttcaccattctacttgttaattttg 20947858  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 670 - 816
Target Start/End: Original strand, 21494657 - 21494803
Alignment:
Q  670 ccattatcattatttctaacgttatcccttactttaacctacgcctttctatttccaattatctttgtcttatttctccacctagcttcttcattacctt 769  Q
    ||||||||||| |||||||| | ||||||||||||||| || ||||||||||||   |||| ||| ||||||||||| |||||| | | |||||||||||    
T  21494657 ccattatcattttttctaacatcatcccttactttaacttatgcctttctatttaagattaccttcgtcttatttcttcacctaacattttcattacctt 21494756  T
Q  770 aaacctcttcatcattctatttgttcattttggttctacactcttct 816  Q
    ||||  |||||||||||||  |||||||| ||| |||||||||||||    
T  21494757 aaactacttcatcattctacctgttcattctggctctacactcttct 21494803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 20947091 - 20947165
Alignment:
Q  12 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacat 86  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||||||||    
T  20947091 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatcaacat 20947165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 820
Target Start/End: Complemental strand, 21499863 - 21499690
Alignment:
Q  647 tttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttctatttccaattatctttgtcttatttct 746  Q
    |||||| ||| ||| ||||||||||||||||||||| |||| | |||  ||| |||||||| ||| |||| |||||| ||||||   | ||||||| |||    
T  21499863 tttaacctaaagtctttacctcaccattatcattatctctagcatta-acctcactttaacttacaccttcctattttcaattacgctggtcttatctct 21499765  T
Q  747 ccacctagcttcttcatt-accttaaacctcttcatcattctatttgttcattttggttctacactcttctatct 820  Q
     ||||||   |||||||| | |||||||| ||||  || | || |||||| |||||||  |||||||||||||||    
T  21499764 tcacctaatatcttcattcatcttaaaccacttccccaatttaattgttccttttggtcatacactcttctatct 21499690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1405 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 621 - 801
Target Start/End: Original strand, 629 - 809
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    |||||||| |||||||| |  ||||||||||| |||  |  |||| |||||||||||| | |||||||| ||||||||||||||||| ||||||||| ||    
T  629 tcttaaattgaccacactcatttcattttaacctaagttttttacttcaccattatcaatgtttctaacattatcccttactttaacttacgcctttata 728  T
Q  721 tttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttg 801  Q
    ||| ||||||  || |||||||| || |||||||| ||||||||||||||||||  |||| ||||||||||||| ||||||    
T  729 tttgcaattacgttcgtcttattccttcacctagcatcttcattaccttaaaccatttcaccattctatttgttaattttg 809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 621 - 810
Target Start/End: Complemental strand, 13560714 - 13560527
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    ||||||||||||||| || |  |||||||||| |||  || |||| ||||||||| |||| |||| |||   |||| |||||||||  ||||||||| ||    
T  13560714 tcttaaatcgaccactcatt--tcattttaacctaagttcgttacttcaccattaccattctttcaaacaacatcctttactttaatttacgcctttata 13560617  T
Q  721 tttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacac 810  Q
    ||| ||||||| ||||||||||| || |||||||| |||||||||||||||||| ||||| ||||||| ||||| ||||||| |||||||    
T  13560616 ttttcaattatgtttgtcttattccttcacctagcatcttcattaccttaaaccacttcaccattctacttgttaattttggctctacac 13560527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 13560912 - 13560807
Alignment:
Q  119 ctcaacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtacttaattctaa 218  Q
    |||||||| || |||| |||||||| ||||| || ||||||| | ||||||||  |||||||||| | ||||||||| ||| ||||| |||| |||||||    
T  13560912 ctcaacattgttattactcaacattttcatttcttaacattttt-attaaaactcacactcaacattggctccccttgtttactacgcacttcattctaa 13560814  T
Q  219 cggcaac 225  Q
    |||||||    
T  13560813 cggcaac 13560807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 13561003 - 13560905
Alignment:
Q  12 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacatcatggattcttcattactaaacat 110  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||  |||| |||  ||||||||| || |||||    
T  13561003 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatgtacattatgatttcttcattgctcaacat 13560905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 17452 - 17622
Alignment:
Q  34 acaacataatttcatttgtcagactcattatttacgtgatcattaa------tcaacatcatggattcttcattactaaacatcgtcgccactcaacatc 127  Q
    ||||||||||||||| ||| |||||||| |||||||| ||||| ||      |||||||||||| |||||||||||| |||||||||   |||||||||     
T  17452 acaacataatttcatctgttagactcatcatttacgtcatcatcaacattattcaacatcatggtttcttcattactcaacatcgtcattactcaacatt 17551  T
Q  128 gtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttattt 199  Q
    ||||||  ||| ||||||||||  |||||| |||| ||||||||||| |||||||||| | |||||||||||    
T  17552 gtcatttctcagcattgtcatttatcaaca-ttgtaattaaaacctaaactcaacactggatccccttattt 17622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 17639 - 17704
Alignment:
Q  80 tcaacatcatggattcttcattactaaacatcgtcgccactcaacatcgtcattattcaacattgt 145  Q
    |||||||||||| ||||||||||||  ||||||||   ||||||||| ||||||  ||||||||||    
T  17639 tcaacatcatggtttcttcattactccacatcgtcattactcaacattgtcatttctcaacattgt 17704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 17661 - 17702
Alignment:
Q  118 actcaacatcgtcattattcaacattgtcattactcaacatt 159  Q
    |||| |||||||||||| |||||||||||||| |||||||||    
T  17661 actccacatcgtcattactcaacattgtcatttctcaacatt 17702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 621 - 810
Target Start/End: Complemental strand, 25582636 - 25582447
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    |||||||| |||| ||| |  ||||||||||| |||  |  |||| ||| |||||||| | |||||||| ||||||||||||||||| ||||||||| ||    
T  25582636 tcttaaattgacctcactcatttcattttaacataagtttgttacttcatcattatcaatgtttctaacattatcccttactttaacttacgcctttata 25582537  T
Q  721 tttccaattatctttgtcttatttctccacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacac 810  Q
    ||| ||||||| ||  | ||||| || |||||||| ||||||||||||||||||  |||  ||||||| ||||| ||||||  |||||||    
T  25582536 ttttcaattatgttcatgttattccttcacctagcatcttcattaccttaaaccatttctccattctacttgttaattttgactctacac 25582447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 646 - 761
Target Start/End: Original strand, 10190111 - 10190226
Alignment:
Q  646 ttttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttctatttccaattatctttgtcttatttc 745  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||  ||||| |||| ||||| ||| |||| ||| |||||||||  || |||||||  |    
T  10190111 ttttaacttaaagtctttacctcaccattatcattatttctaacaatatcctttacgttaacttacaccttcctacttccaattacattcgtcttatccc 10190210  T
Q  746 tccacctagcttcttc 761  Q
    | |||||||| |||||    
T  10190211 ttcacctagcatcttc 10190226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 25582831 - 25582728
Alignment:
Q  121 caacatcgtcattattcaacattgtcattactcaacatttgtcattaaaacctacactcaacactagctccccttatttcctacgtacttaattctaacg 220  Q
    |||||| || |||| |||||||||||||| ||||||||| ||||||||||| | ||||||| | | ||||||||||||| ||||| |||| || ||||||    
T  25582831 caacattgttattactcaacattgtcatttctcaacatt-gtcattaaaacttgcactcaatattggctccccttatttactacgcacttcatactaacg 25582733  T
Q  221 gcaac 225  Q
    |||||    
T  25582732 gcaac 25582728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 748 - 810
Target Start/End: Original strand, 23907871 - 23907933
Alignment:
Q  748 cacctagcttcttcattaccttaaacctcttcatcattctatttgttcattttggttctacac 810  Q
    |||||||| |||||||||||||||||| ||||| ||||||| ||||| ||||||| |||||||    
T  23907871 cacctagcatcttcattaccttaaaccacttcaccattctacttgttaattttggctctacac 23907933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 25582934 - 25582860
Alignment:
Q  12 acatcatcaacagctcccaattacaacataatttcatttgtcagactcattatttacgtgatcattaatcaacat 86  Q
    |||||||||| | |||  || ||||||| |||||||| |||||||||||| |||||||| |||||||||||||||    
T  25582934 acatcatcaataactcataactacaacagaatttcatatgtcagactcatcatttacgtcatcattaatcaacat 25582860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 680
Target Start/End: Original strand, 17458702 - 17458779
Alignment:
Q  603 tctcaacatcatccatcatcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcatt 680  Q
    |||||| |||||| ||| ||||||||||||||||| |  ||||||||||| ||| ||| |||| |||||| |||||||    
T  17458702 tctcaatatcatctatcctcttaaatcgaccacactcgtttcattttaacctaaggtctttacttcaccaatatcatt 17458779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 730
Target Start/End: Original strand, 22924662 - 22924771
Alignment:
Q  621 tcttaaatcgaccacacactattcattttaacttaatgtccttacctcaccattatcattatttctaacgttatcccttactttaacctacgcctttcta 720  Q
    ||||||||||||||||| |  ||||||| ||| ||| ||| || | |||||| |||||||  | ||||| ||||||| ||| ||||| ||||||||| ||    
T  22924662 tcttaaatcgaccacactcatttcatttaaacataaggtcgttgcttcaccaatatcattcatactaacattatcccctacgttaacttacgcctttata 22924761  T
Q  721 tttccaatta 730  Q
    ||||| ||||    
T  22924762 tttccgatta 22924771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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